Blink.jl does not build in Docker Julia images #289
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NLaws
changed the title
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I have isolated the issue to Docker. With the Dockerfile: FROM julia:1.6.5
CMD ["bash"]Building the file with: docker build -t jul165 .Then yields: Installing known registries into `~/.julia`
Added registry `General` to `~/.julia/registries/General`
Resolving package versions...
Installed Pidfile ───────────────────── v1.2.0
Installed Lazy ──────────────────────── v0.15.1
Installed Mux ───────────────────────── v0.7.6
Installed Mustache ──────────────────── v1.0.12
Installed TableTraits ───────────────── v1.0.1
Installed Tables ────────────────────── v1.6.1
Installed WebSockets ────────────────── v1.5.9
Installed DataValueInterfaces ───────── v1.0.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Blink ─────────────────────── v0.12.5
Installed IniFile ───────────────────── v0.5.0
Installed JSExpr ────────────────────── v0.5.3
Installed URIParser ─────────────────── v0.4.1
Installed JSON ──────────────────────── v0.21.2
Installed MbedTLS ───────────────────── v1.0.3
Installed MacroTools ────────────────── v0.5.9
Installed URIs ──────────────────────── v1.3.0
Installed FunctionalCollections ─────── v0.5.0
Installed Parsers ───────────────────── v2.2.1
Installed OrderedCollections ────────── v1.4.1
Installed Hiccup ────────────────────── v0.2.2
Installed AssetRegistry ─────────────── v0.1.0
Installed Widgets ───────────────────── v0.6.4
Installed Observables ───────────────── v0.4.0
Installed BinDeps ───────────────────── v1.0.2
Installed ColorTypes ────────────────── v0.11.0
Installed Requires ──────────────────── v1.3.0
Installed HTTP ──────────────────────── v0.9.17
Installed Colors ────────────────────── v0.12.8
Installed DataAPI ───────────────────── v1.9.0
Installed FixedPointNumbers ─────────── v0.8.4
Installed Reexport ──────────────────── v1.2.2
Installed WebIO ─────────────────────── v0.8.16
Updating `~/.julia/environments/v1.6/Project.toml`
[ad839575] + Blink v0.12.5
Updating `~/.julia/environments/v1.6/Manifest.toml`
[bf4720bc] + AssetRegistry v0.1.0
[9e28174c] + BinDeps v1.0.2
[ad839575] + Blink v0.12.5
[3da002f7] + ColorTypes v0.11.0
[5ae59095] + Colors v0.12.8
[9a962f9c] + DataAPI v1.9.0
[e2d170a0] + DataValueInterfaces v1.0.0
[53c48c17] + FixedPointNumbers v0.8.4
[de31a74c] + FunctionalCollections v0.5.0
[cd3eb016] + HTTP v0.9.17
[9fb69e20] + Hiccup v0.2.2
[83e8ac13] + IniFile v0.5.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[97c1335a] + JSExpr v0.5.3
[682c06a0] + JSON v0.21.2
[50d2b5c4] + Lazy v0.15.1
[1914dd2f] + MacroTools v0.5.9
[739be429] + MbedTLS v1.0.3
[ffc61752] + Mustache v1.0.12
[a975b10e] + Mux v0.7.6
[510215fc] + Observables v0.4.0
[bac558e1] + OrderedCollections v1.4.1
[69de0a69] + Parsers v2.2.1
[fa939f87] + Pidfile v1.2.0
[189a3867] + Reexport v1.2.2
[ae029012] + Requires v1.3.0
[3783bdb8] + TableTraits v1.0.1
[bd369af6] + Tables v1.6.1
[30578b45] + URIParser v0.4.1
[5c2747f8] + URIs v1.3.0
[0f1e0344] + WebIO v0.8.16
[104b5d7c] + WebSockets v1.5.9
[cc8bc4a8] + Widgets v0.6.4
[0dad84c5] + ArgTools
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[f43a241f] + Downloads
[7b1f6079] + FileWatching
[b77e0a4c] + InteractiveUtils
[b27032c2] + LibCURL
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[ca575930] + NetworkOptions
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[a4e569a6] + Tar
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
[deac9b47] + LibCURL_jll
[29816b5a] + LibSSH2_jll
[c8ffd9c3] + MbedTLS_jll
[14a3606d] + MozillaCACerts_jll
[83775a58] + Zlib_jll
[8e850ede] + nghttp2_jll
[3f19e933] + p7zip_jll
Building WebIO → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/5fe32e4086d49f7ab9b087296742859f3ae6d62a/build.log`
Building Blink → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/08d0b679fd7caa49e2bca9214b131289e19808c0/build.log`
ERROR: Error building `Blink`:
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 664 100 664 0 0 2813 0 --:--:-- --:--:-- --:--:-- 2813
100 71.6M 100 71.6M 0 0 3446k 0 0:00:21 0:00:21 --:--:-- 2876k
ERROR: LoadError: IOError: could not spawn `unzip -q electron-v4.0.4-linux-x64.zip -d atom`: no such file or directory (ENOENT)
Stacktrace:
[1] _spawn_primitive(file::String, cmd::Cmd, stdio::Vector{Any})
@ Base ./process.jl:99
[2] #637
@ ./process.jl:112 [inlined]
[3] setup_stdios(f::Base.var"#637#638"{Cmd}, stdios::Vector{Any})
@ Base ./process.jl:196
[4] _spawn
@ ./process.jl:111 [inlined]
[5] run(::Cmd; wait::Bool)
@ Base ./process.jl:439
[6] run
@ ./process.jl:438 [inlined]
[7] (::Main.BuildBlink.var"#1#2")()
@ Main.BuildBlink ~/.julia/packages/Blink/mwJC9/src/AtomShell/install.jl:66
[8] cd(f::Main.BuildBlink.var"#1#2", dir::String)
@ Base.Filesystem ./file.jl:106
[9] install()
@ Main.BuildBlink ~/.julia/packages/Blink/mwJC9/src/AtomShell/install.jl:27
[10] top-level scope
@ ~/.julia/packages/Blink/mwJC9/deps/build.jl:14
[11] include(fname::String)
@ Base.MainInclude ./client.jl:444
[12] top-level scope
@ none:5
in expression starting at /root/.julia/packages/Blink/mwJC9/deps/build.jl:1
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:55
[2] (::Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1049
[3] withenv(::Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, ::Pair{String, String}, ::Vararg{Pair{String, B} where B, N} where N)
@ Base ./env.jl:161
[4] (::Pkg.Operations.var"#109#113"{String, Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1547
[5] with_temp_env(fn::Pkg.Operations.var"#109#113"{String, Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1449
[6] (::Pkg.Operations.var"#108#112"{Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1522
[7] mktempdir(fn::Pkg.Operations.var"#108#112"{Pkg.Operations.var"#82#87"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:729
[8] mktempdir(fn::Function, parent::String) (repeats 2 times)
@ Base.Filesystem ./file.jl:727
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1488
[10] build_versions(ctx::Pkg.Types.Context, uuids::Vector{Base.UUID}; verbose::Bool)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1030
[11] build_versions
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:957 [inlined]
[12] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Vector{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1246
[13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Iterators.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:204
[14] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:80
[15] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:78
[16] #add#23
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:76 [inlined]
[17] add
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:76 [inlined]
[18] #add#22
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:75 [inlined]
[19] add(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:75
[20] top-level scope
@ none:1
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NLaws
changed the title
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also does not build in Julia 1.7 image |
In a custom image, I fixed this error with: |
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I guess this is operating system dependent, but whatever OS the official Julia images are built on do not include nlaws-> docker build -t jul173 .
[+] Building 1.8s (6/6) FINISHED
=> [internal] load build definition from Dockerfile 0.0s
=> => transferring dockerfile: 107B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [internal] load metadata for docker.io/library/julia:1.7.3 1.1s
=> [auth] library/julia:pull token for registry-1.docker.io 0.0s
=> CACHED [1/2] FROM docker.io/library/julia:1.7.3@sha256:3bb787d5131372f0a451d1c3f611d808d6134a11ec29ffb1dc9f49de15a0b3c4 0.0s
=> ERROR [2/2] RUN apt-get install -y unzip 0.4s
------
> [2/2] RUN apt-get install -y unzip:
#6 0.389 Reading package lists...
#6 0.405 Building dependency tree...
#6 0.407 Reading state information...
#6 0.413 E: Unable to locate package unzip
------
executor failed running [/bin/sh -c apt-get install -y unzip]: exit code: 100Maybe the most sustainable solution to this issue is to remove the need for |
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What about: |
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@francoislaurent Yep that fixed it. Thank you! |
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As a complementary note, you may run into permission issues on instantiating a Blink I solved this issue similarly installing dependencies for electron: I must mention I also previously installed |
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I have added PlotlyJS.jl to my package dependencies (which has Blink.jl as a dependency) and I am not able to get Blink.jl to build in a Docker container from Ubuntu 18 or 20/latest. The issue may be Docker and/or Actions specific, I'm not sure. Here is the trace back, which is on Actions for my package here:
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