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update news, bump version
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jgreener64 committed Feb 21, 2022
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8 changes: 8 additions & 0 deletions NEWS.md
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# Molly.jl release notes

## v0.8.0 - Feb 2022

- General interactions are renamed to pairwise interactions throughout to better reflect their nature. The abstract type is now `PairwiseInteraction` and the keyword argument to `System` is now `pairwise_inters`. General interaction now refers to a new type of interaction that takes in the whole system and returns forces for all atoms, allowing interactions such as neural network potentials acting on the whole system. This is available via the keyword argument `general_inters` to `System`.
- Implicit solvent models are added via the `ImplicitSolventOBC` general interaction type and the `implicit_solvent` keyword argument when setting up a `System` from a file. The Onufriev-Bashford-Case GBSA model with parameter sets I and II is provided.
- `charge` is added to access the partial charge of an `Atom`.
- The `box_size` keyword argument may be given when setting up a `System` from a file.
- A bug in `KineticEnergyLogger` is fixed.

## v0.7.0 - Jan 2022

- The `force` and `potential_energy` functions for general interactions now take the vector between atom i and atom j as an argument in order to save on computation.
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2 changes: 1 addition & 1 deletion Project.toml
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name = "Molly"
uuid = "aa0f7f06-fcc0-5ec4-a7f3-a573f33f9c4c"
authors = ["Joe G Greener <[email protected]>"]
version = "0.7.0"
version = "0.8.0"

[deps]
AtomsBase = "a963bdd2-2df7-4f54-a1ee-49d51e6be12a"
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Registration pull request created: JuliaRegistries/General/55124

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.8.0 -m "<description of version>" 40f92aade109b66add49a44d1cd22aadb85e1e9d
git push origin v0.8.0

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