Readme edits

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier
-_commit: 99b5b4b
+_commit: 9d860be
 _src_path: gh:LabAutomationAndScreening/copier-python-package-template.git
 create_docs: true
 description: Generating programs for Vialab to control an Integra Assist Plus liquid

.devcontainer/Dockerfile

@@ -1,7 +1,11 @@
 FROM mcr.microsoft.com/vscode/devcontainers/universal:2.9.0-focal
 
+SHELL ["/bin/bash", "-o", "pipefail", "-c"]
+
 RUN apt-get update -y && apt-get install -y \
-    bash-completion
+    "bash-completion=$(apt-cache madison bash-completion | awk '{print $3}' | grep '^1:2.10' | head -n 1)" --no-install-recommends \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
 
 # SSH
 EXPOSE 2222

.pre-commit-config.yaml

@@ -43,7 +43,7 @@ repos:
 
 # Reformatting (should generally come before any file format or other checks, because reformatting can change things)
 -   repo: https://github.com/crate-ci/typos
-    rev: 0fa392de4a080a8f22469c05415090ee3addf4fb  # frozen: v1.28.4
+    rev: b1b019a4372e6055cd23b7a8e299c56f9d522a94  # frozen: dictgen-v0.3.1
     hooks:
       - id: typos
 -   repo: https://github.com/pre-commit/pre-commit-hooks
@@ -151,8 +151,15 @@ repos:
         # this hook fails on Sphinx documentation https://github.com/Lucas-C/pre-commit-hooks-markup/issues/13
         exclude: docs/.*\.rst$
 
+-   repo: https://github.com/hadolint/hadolint
+    rev: c3dc18df7a501f02a560a2cc7ba3c69a85ca01d3  # frozen: v2.13.1-beta
+    hooks:
+    -   id: hadolint-docker
+        name: Lint Dockerfiles
+        description: Runs hadolint to lint Dockerfiles
+
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: f0b5944bef86f50d875305821a0ab0d8c601e465  # frozen: v0.8.4
+    rev: 89c421dff2e1026ba12cdb9ebd731f4a83aa8021  # frozen: v0.8.6
     hooks:
     -   id: ruff
         name: ruff-src
@@ -165,7 +172,7 @@ repos:
     -   id: ruff-format
 
 -   repo: https://github.com/pylint-dev/pylint
-    rev: a5a1bc3a9602d08f15ac90ad12f5b25bde375613  # frozen: v3.3.2
+    rev: c28580be76fe1ec55a6cac41833c0bd68070d2f7  # frozen: v3.3.3
     hooks:
     -   id: pylint
         name: pylint

Dockerfile

@@ -2,7 +2,6 @@
 # Following documentation https://mybinder.readthedocs.io/en/latest/tutorials/dockerfile.html
 FROM python:3.12.7-bookworm
 
-# TODO: pin these
 RUN python3 -m pip install --no-cache-dir --root-user-action=ignore --disable-pip-version-check notebook==7.3.1 jupyterlab==4.3.4
 
 ARG NB_USER=jovyan
@@ -24,7 +23,7 @@ USER ${NB_USER}
 
 WORKDIR /home/jovyan
 
-RUN python3 -m pip install --root-user-action=ignore --disable-pip-version-check -e .
+RUN python3 -m pip install --no-cache-dir --root-user-action=ignore --disable-pip-version-check -e .
 
 
 ENTRYPOINT []

README.md

@@ -11,11 +11,11 @@
 [![Documentation Status](https://readthedocs.org/projects/pyalab/badge/?version=latest)](https://pyalab.readthedocs.io/en/latest/?badge=latest)
 
 # Usage
-Pyalab is a way to use Python generate programs for Vialab---the software that controls the Integra ASSIST Plus automated liquid handling robot.
+Pyalab is a way to use Python to generate programs for Vialab---the software that controls the Integra ASSIST Plus automated liquid handling robot.
 
 Documentation is hosted on [ReadTheDocs](https://pyalab.readthedocs.io/en/latest/?badge=latest).
 
-Don't want to figure out how to install Python on your computer?  No problem! Use this MyBinder link to open a free online environment (no sign-up required) where you can use `pyalab` to create and then download your Vialab programs. [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/LabAutomationAndScreening/pyalab/main?labpath=docs%2Fcreate_vialab_program.ipynb)
+Don't want to figure out how to install Python on your computer?  No problem! Use this MyBinder link to launch a free online environment (no sign-up required) where you can use `pyalab` to create and then download your Vialab programs. [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/LabAutomationAndScreening/pyalab/main?labpath=docs%2Fcreate_vialab_program.ipynb)
 
 # Development
 This project has a dev container. If you already have VS Code and Docker installed, you can click the badge above or [here](https://vscode.dev/redirect?url=vscode://ms-vscode-remote.remote-containers/cloneInVolume?url=https://github.com/LabAutomationAndScreening/pyalab) to get started. Clicking these links will cause VS Code to automatically install the Dev Containers extension if needed, clone the source code into a container volume, and spin up a dev container for use.