[ENH] Add verbose outputs for pipeline walkthrough #174
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# Conflicts: # tedana/workflows/tedana.py
# Conflicts: # tedana/workflows/tedana.py
Codecov Report
@@ Coverage Diff @@
## master #174 +/- ##
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- Coverage 51.98% 51.63% -0.35%
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Files 32 32
Lines 1941 1956 +15
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+ Hits 1009 1010 +1
- Misses 932 946 +14
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# Conflicts: # tedana/decomposition/eigendecomp.py # tedana/workflows/tedana.py
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It's passing! I think it's ready for review! |
emdupre
reviewed
Jan 14, 2019
emdupre
approved these changes
Jan 14, 2019
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Per discussion in #163 (see this comment), this PR adds in outputs necessary for #149.
I will need to update this PR after #152 is dealt with, but am keeping it separate to keep both PRs focused.
Changes proposed in this pull request:
label,out_dir, andverbosearguments tofitmodels_direct. Fitted models for TEDPCA and TEDICA can thus write out different files.fitmodels_direct, including *_R2_pred.nii, *_S0_pred.nii, *_betas_catd.nii, and *_metric_weights.nii.R2_predis a 5D array (X x Y x Z x E x C) with the predicted value at each echo and voxel, for each component, for the R2 model.S0_predis the same, but for the S0 model.metric_weightsis a 4D array (X x Y x Z x C) with the voxel- and component-wise weights for averaging the R2 and S0 F values to get component-specific Kappa and Rho values.betas_catdis a 5D (X x Y x Z x E x C) with the beta for the raw data at each echo for each component. These values are compared to the predicted values for the R2 and S0 models in evaluating model fit.verboseargument totedpca.