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49 Open 29 Closed
49 Open 29 Closed
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Issues list

Workflow crashes when hi-c read input uses dash before read2
#141 opened Dec 11, 2024 by mahesh-panchal
Add Citation CFF
#140 opened Dec 5, 2024 by mahesh-panchal
resource requested too high on Rackham
#138 opened Nov 8, 2024 by gbdias
9
FASTK large memory footprint on dardel compute cluster
#137 opened Nov 8, 2024 by MartinPippel
The pipeline creates 2 hifiasm output files
#136 opened Nov 8, 2024 by MartinPippel
Hifiasm: create alt contigs
#135 opened Nov 8, 2024 by MartinPippel
better discrimination between stage and step
#134 opened Nov 8, 2024 by MartinPippel
Clodius crashes when converting bedgraph into hitile files
#133 opened Nov 7, 2024 by MartinPippel
optimize PURGEDUPS_SPLITFA process
#98 opened May 6, 2024 by MartinPippel
1
Check if GOAT API is easier to parse out then GOAT cli
#92 opened Mar 8, 2024 by mahesh-panchal
Dot plots of putative mitogenomes vs final mitogenomes
#90 opened Mar 6, 2024 by mahesh-panchal
Automated codon usage table selection
#88 opened Mar 5, 2024 by mahesh-panchal
2
Alternative mitogenome strategy needed when MitoHifi fails.
#86 opened Mar 1, 2024 by gbdias
8
Busco doesn't exit with an error when one of the subtools is killed, or print a suitable error message
#85 opened Mar 1, 2024 by mahesh-panchal
Is it better to Kmer count the combined fastq or the parts?
#84 opened Feb 29, 2024 by mahesh-panchal
1
MultiQC report
#83 opened Feb 28, 2024 by mahesh-panchal
@mahesh-panchal
1
Large memory node needed for certain processes
#82 opened Feb 27, 2024 by n-equals-one
2
Out of memory kill issued by slurm but Nextflow process marked as completed.
#81 opened Feb 26, 2024 by mahesh-panchal
New Module: Klumpy enhancement New feature or request
#78 opened Feb 16, 2024 by mahesh-panchal
New Module: TIPP_plastid (chloroplast assembly) enhancement New feature or request
#76 opened Feb 6, 2024 by mahesh-panchal
New Module: Hostile enhancement New feature or request
#75 opened Jan 25, 2024 by mahesh-panchal
New Module: PGAP enhancement New feature or request
#74 opened Jan 8, 2024 by mahesh-panchal
New Module: teloclip enhancement New feature or request
#73 opened Jan 8, 2024 by mahesh-panchal
New Module: OMArk enhancement New feature or request
#71 opened Dec 12, 2023 by mahesh-panchal
New Module: Taxon Kit enhancement New feature or request
#69 opened Nov 24, 2023 by mahesh-panchal
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