renamed pyEED -> pyeed

PyEED · Feb 19, 2024 · 812e51d · 812e51d
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diff --git a/pyEED/__init__.py → pyeed/__init__.py b/pyEED/__init__.py → pyeed/__init__.py
diff --git a/pyEED/aligners/__init__.py → pyeed/aligners/__init__.py b/pyEED/aligners/__init__.py → pyeed/aligners/__init__.py
diff --git a/pyEED/aligners/clustalo.py → pyeed/aligners/clustalo.py b/pyEED/aligners/clustalo.py → pyeed/aligners/clustalo.py
diff --git a/pyEED/aligners/pairwise.py → pyeed/aligners/pairwise.py b/pyEED/aligners/pairwise.py → pyeed/aligners/pairwise.py
diff --git a/pyEED/containers/__init__.py → pyeed/containers/__init__.py b/pyEED/containers/__init__.py → pyeed/containers/__init__.py
diff --git a/pyEED/containers/abstract_container.py → pyeed/containers/abstract_container.py b/pyEED/containers/abstract_container.py → pyeed/containers/abstract_container.py
diff --git a/pyEED/core/__init__.py → pyeed/core/__init__.py b/pyEED/core/__init__.py → pyeed/core/__init__.py
diff --git a/pyEED/core/abstractregion.py → pyeed/core/abstractregion.py b/pyEED/core/abstractregion.py → pyeed/core/abstractregion.py
diff --git a/pyEED/core/abstractsequence.py → pyeed/core/abstractsequence.py b/pyEED/core/abstractsequence.py → pyeed/core/abstractsequence.py
diff --git a/pyEED/core/alignment.py → pyeed/core/alignment.py b/pyEED/core/alignment.py → pyeed/core/alignment.py
diff --git a/pyEED/core/author.py → pyeed/core/author.py b/pyEED/core/author.py → pyeed/core/author.py
diff --git a/pyEED/core/citation.py → pyeed/core/citation.py b/pyEED/core/citation.py → pyeed/core/citation.py
diff --git a/pyEED/core/dnainfo.py → pyeed/core/dnainfo.py b/pyEED/core/dnainfo.py → pyeed/core/dnainfo.py
diff --git a/pyEED/core/dnaregion.py → pyeed/core/dnaregion.py b/pyEED/core/dnaregion.py → pyeed/core/dnaregion.py
diff --git a/pyEED/core/dnaregiontype.py → pyeed/core/dnaregiontype.py b/pyEED/core/dnaregiontype.py → pyeed/core/dnaregiontype.py
diff --git a/pyEED/core/nucleotidesequence.py → pyeed/core/nucleotidesequence.py b/pyEED/core/nucleotidesequence.py → pyeed/core/nucleotidesequence.py
diff --git a/pyEED/core/organism.py → pyeed/core/organism.py b/pyEED/core/organism.py → pyeed/core/organism.py
diff --git a/pyEED/core/pairwisealignment.py → pyeed/core/pairwisealignment.py b/pyEED/core/pairwisealignment.py → pyeed/core/pairwisealignment.py
diff --git a/pyEED/core/proteininfo.py → pyeed/core/proteininfo.py b/pyEED/core/proteininfo.py → pyeed/core/proteininfo.py
diff --git a/pyEED/core/proteinregion.py → pyeed/core/proteinregion.py b/pyEED/core/proteinregion.py → pyeed/core/proteinregion.py
diff --git a/pyEED/core/proteinregiontype.py → pyeed/core/proteinregiontype.py b/pyEED/core/proteinregiontype.py → pyeed/core/proteinregiontype.py
diff --git a/pyEED/core/proteinsequence.py → pyeed/core/proteinsequence.py b/pyEED/core/proteinsequence.py → pyeed/core/proteinsequence.py
diff --git a/pyEED/core/proteinsitetype.py → pyeed/core/proteinsitetype.py b/pyEED/core/proteinsitetype.py → pyeed/core/proteinsitetype.py
diff --git a/pyEED/core/region.py → pyeed/core/region.py b/pyEED/core/region.py → pyeed/core/region.py
diff --git a/pyEED/core/sequence.py → pyeed/core/sequence.py b/pyEED/core/sequence.py → pyeed/core/sequence.py
diff --git a/pyEED/core/site.py → pyeed/core/site.py b/pyEED/core/site.py → pyeed/core/site.py
diff --git a/pyEED/core/span.py → pyeed/core/span.py b/pyEED/core/span.py → pyeed/core/span.py
diff --git a/pyEED/core/standardnumbering.py → pyeed/core/standardnumbering.py b/pyEED/core/standardnumbering.py → pyeed/core/standardnumbering.py
diff --git a/pyEED/core/structure.py → pyeed/core/structure.py b/pyEED/core/structure.py → pyeed/core/structure.py
diff --git a/pyEED/core/substrate.py → pyeed/core/substrate.py b/pyEED/core/substrate.py → pyeed/core/substrate.py
diff --git a/pyEED/ncbi/__init__.py → pyeed/ncbi/__init__.py b/pyEED/ncbi/__init__.py → pyeed/ncbi/__init__.py
diff --git a/pyEED/ncbi/seq_io.py → pyeed/ncbi/seq_io.py b/pyEED/ncbi/seq_io.py → pyeed/ncbi/seq_io.py
diff --git a/pyEED/ncbi/utils.py → pyeed/ncbi/utils.py b/pyEED/ncbi/utils.py → pyeed/ncbi/utils.py
diff --git a/pyEED/network/__init__.py → pyeed/network/__init__.py b/pyEED/network/__init__.py → pyeed/network/__init__.py
diff --git a/pyEED/network/network.py → pyeed/network/network.py b/pyEED/network/network.py → pyeed/network/network.py
diff --git a/pyEED/schemes/pyeed_schema.md → pyeed/schemes/pyeed_schema.md b/pyEED/schemes/pyeed_schema.md → pyeed/schemes/pyeed_schema.md
diff --git a/pyEED/utility/__init__.py → pyeed/utility/__init__.py b/pyEED/utility/__init__.py → pyeed/utility/__init__.py
diff --git a/pyEED/utility/utilities.py → pyeed/utility/utilities.py b/pyEED/utility/utilities.py → pyeed/utility/utilities.py