reorganize into pkgext (#19)

QuantumSavory · May 27, 2023 · 5992690 · 5992690
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diff --git a/.github/workflows/ci-julia-nightly.yml b/.github/workflows/ci-julia-nightly.yml
@@ -11,17 +11,17 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        version:
-          - nightly
-        os:
-          - ubuntu-latest
-        threads:
-          - '1'
-        jet:
-          - 'true'
-          - 'false'
-        arch:
-          - x64
+        include:
+          - os: ubuntu-latest
+            arch: x64
+            version: nightly
+            threads: 2
+            jet: 'false'
+          - os: ubuntu-latest
+            arch: x64
+            version: '1'
+            threads: 2
+            jet: 'true'
     steps:
       - uses: actions/checkout@v3
       - uses: julia-actions/setup-julia@v1
@@ -38,15 +38,11 @@ jobs:
             ${{ runner.os }}-test-${{ env.cache-name }}-
             ${{ runner.os }}-test-
             ${{ runner.os }}-
-      - name: Install and Test
-        shell: julia --project=monorepo {0}
-        run: |
-          using Pkg;
-          pkg"dev . ./QSymbolicsBase ./QSymbolicsClifford ./QSymbolicsOptics"
-          Pkg.test("QuantumSymbolics"; coverage=true)
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
         env:
           JULIA_NUM_THREADS: ${{ matrix.threads }}
-          QSYMBOLICS_JET_TEST: ${{ matrix.jet }}
+          JET_TEST: ${{ matrix.jet }}
       - uses: julia-actions/julia-processcoverage@v1
       - uses: codecov/codecov-action@v3
         with:

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -13,7 +13,6 @@ jobs:
       matrix:
         version:
           - '1'
-          - '1.8'
         os:
           - ubuntu-latest
           - windows-latest
@@ -38,12 +37,8 @@ jobs:
             ${{ runner.os }}-test-${{ env.cache-name }}-
             ${{ runner.os }}-test-
             ${{ runner.os }}-
-      - name: Install and Test
-        shell: julia --project=monorepo {0}
-        run: |
-          using Pkg;
-          pkg"dev . ./QSymbolicsBase ./QSymbolicsClifford ./QSymbolicsOptics"
-          Pkg.test("QuantumSymbolics"; coverage=true)
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
         env:
           JULIA_NUM_THREADS: ${{ matrix.threads }}
       - uses: julia-actions/julia-processcoverage@v1

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,8 +1,26 @@
 # News
 
+## v0.2.0
+
+- **(breaking)** Merge with `QSymbolicsBase` and turn `QSymbolicsOptics` and `QSymbolicsClifford` into extensions.
+- **(breaking)** Require julia 1.9.
+- Drop `QuantumOptics` dependencies (now depends only on `QuantumOpticsBase`)
+
+## `QSymbolicsBase` v0.1.2
+
+- Pretty printing with Latexify.
+- Implement bras.
+
 ## v0.1.1
 
 - Bosonic states basis and common states and operators.
 - Bumping `QSymbolicsBase` to 0.1.1.
 - Bumping `QSymbolicsOptics` to 0.1.1.
 - Added tests.
+
+## `QSymbolicsBase` v0.1.1
+
+- Bosonic states basis and common states and operators.
+- Documentation and more symbol names available for the qubit base states.
+- `SApplyOp` implemented for superoperator acting on operator.
+- `STensorSuperOperator` implemented for tensor products of superoperators.
diff --git a/Project.toml b/Project.toml
@@ -1,27 +1,35 @@
 name = "QuantumSymbolics"
 uuid = "efa7fd63-0460-4890-beb7-be1bbdfbaeae"
 authors = ["QuantumSymbolics.jl contributors"]
-version = "0.1.2"
+version = "0.2.0"
 
 [deps]
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
-QSymbolicsBase = "a8697a1a-c835-4068-9491-e8abc49d0056"
-QSymbolicsClifford = "3bf15ae1-300d-4269-a8e5-03a020b0328d"
-QSymbolicsOptics = "3c38c10f-068b-409d-8b1c-aa4375858705"
-QuantumClifford = "0525e862-1e90-11e9-3e4d-1b39d7109de1"
+Latexify = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+PrecompileTools = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
 QuantumInterface = "5717a53b-5d69-4fa3-b976-0bf2f97ca1e5"
+SymbolicUtils = "d1185830-fcd6-423d-90d6-eec64667417b"
+Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
+TermInterface = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c"
+
+[weakdeps]
+QuantumClifford = "0525e862-1e90-11e9-3e4d-1b39d7109de1"
 QuantumOpticsBase = "4f57444f-1401-5e15-980d-4471b28d5678"
-Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
-SnoopPrecompile = "66db9d55-30c0-4569-8b51-7e840670fc0c"
+
+[extensions]
+MixedCliffordOpticsExt = ["QuantumClifford", "QuantumOpticsBase"]
+QuantumCliffordExt = "QuantumClifford"
+QuantumOpticsExt = "QuantumOpticsBase"
 
 [compat]
 Graphs = "1.7.3"
-QSymbolicsBase = "0.1.1"
-QSymbolicsClifford = "0.1.1"
-QSymbolicsOptics = "0.1.1"
-QuantumClifford = "0.7"
+Latexify = "0.15"
+PrecompileTools = "1"
+QuantumClifford = "0.8"
 QuantumInterface = "0.1.0"
 QuantumOpticsBase = "0.3.8"
-Reexport = "1.2.2"
-SnoopPrecompile = "1"
-julia = "1.8"
+SymbolicUtils = "1"
+Symbolics = "5"
+TermInterface = "0.3"
+julia = "1.9"
diff --git a/QSymbolicsBase/CHANGELOG.md b/QSymbolicsBase/CHANGELOG.md
diff --git a/QSymbolicsBase/LICENSE b/QSymbolicsBase/LICENSE
diff --git a/QSymbolicsBase/Project.toml b/QSymbolicsBase/Project.toml
diff --git a/QSymbolicsBase/test/runtests.jl b/QSymbolicsBase/test/runtests.jl
diff --git a/QSymbolicsClifford/CHANGELOG.md b/QSymbolicsClifford/CHANGELOG.md
diff --git a/QSymbolicsClifford/LICENSE b/QSymbolicsClifford/LICENSE
diff --git a/QSymbolicsClifford/Project.toml b/QSymbolicsClifford/Project.toml
diff --git a/QSymbolicsClifford/test/runtests.jl b/QSymbolicsClifford/test/runtests.jl
diff --git a/QSymbolicsOptics/CHANGELOG.md b/QSymbolicsOptics/CHANGELOG.md
diff --git a/QSymbolicsOptics/LICENSE b/QSymbolicsOptics/LICENSE
diff --git a/QSymbolicsOptics/Project.toml b/QSymbolicsOptics/Project.toml
diff --git a/QSymbolicsOptics/test/runtests.jl b/QSymbolicsOptics/test/runtests.jl
diff --git a/docs/Project.toml b/docs/Project.toml
@@ -3,9 +3,10 @@ Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244"
 PrettyPrint = "8162dcfd-2161-5ef2-ae6c-7681170c5f98"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-QSymbolicsBase = "a8697a1a-c835-4068-9491-e8abc49d0056"
-QSymbolicsClifford = "3bf15ae1-300d-4269-a8e5-03a020b0328d"
-QSymbolicsOptics = "3c38c10f-068b-409d-8b1c-aa4375858705"
+QuantumClifford = "0525e862-1e90-11e9-3e4d-1b39d7109de1"
+QuantumInterface = "5717a53b-5d69-4fa3-b976-0bf2f97ca1e5"
+QuantumOptics = "6e0679c1-51ea-5a7c-ac74-d61b76210b0c"
+QuantumOpticsBase = "4f57444f-1401-5e15-980d-4471b28d5678"
 QuantumSymbolics = "efa7fd63-0460-4890-beb7-be1bbdfbaeae"
 Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
diff --git a/docs/make.jl b/docs/make.jl
@@ -4,11 +4,10 @@ push!(LOAD_PATH,"../src/")
 using Documenter
 using DocumenterCitations
 using QuantumSymbolics
-using QSymbolicsBase
-using QSymbolicsClifford
-using QSymbolicsOptics
+using QuantumOptics
+using QuantumClifford
 
-DocMeta.setdocmeta!(QuantumSymbolics, :DocTestSetup, :(using QuantumSymbolics, QSymbolicsBase, QSymbolicsClifford, QSymbolicsOptics); recursive=true)
+DocMeta.setdocmeta!(QuantumSymbolics, :DocTestSetup, :(using QuantumSymbolics, QuantumOptics, QuantumClifford); recursive=true)
 
 function main()
     bib = CitationBibliography(joinpath(@__DIR__,"src/references.bib"))
@@ -20,7 +19,7 @@ function main()
     format = Documenter.HTML(
         assets=["assets/init.js"]
     ),
-    modules = [QuantumSymbolics, QSymbolicsBase, QSymbolicsClifford, QSymbolicsOptics],
+    modules = [QuantumSymbolics],
     authors = "Stefan Krastanov",
     pages = [
         "QuantumSymbolics.jl" => "index.md",

diff --git a/docs/src/API.md b/docs/src/API.md
@@ -12,6 +12,6 @@
 ## Autogenerated API list
 
 ```@autodocs
-Modules = [QuantumSymbolics, QSymbolicsBase, QSymbolicsClifford, QSymbolicsOptics]
+Modules = [QuantumSymbolics]
 Private = false
 ```