added syringae, new staph + putida paper link

index.html

@@ -315,6 +315,29 @@ <h2 class="mb-0">
                 </div>
               </div>
 
+
+              <!-- Limosilactobacillus reuteri -->
+              <div class="panel">
+                <div class="panel-header">
+                  <h2 class="mb-0">
+                    <button class="btn btn-link collapsed organism" type="button" data-toggle="collapse" data-target="#l_reuteri" aria-expanded="false" aria-controls="l_reuteri">
+                      <i>L. reuteri</i>
+                    </button>
+                  </h2>
+                </div>
+                <div id="l_reuteri" class="collapse" aria-labelledby="headingThree" data-parent="#organismAccordion">
+                  <div class="panel-body">
+                    <ul class="nav navbar-dark flex-column">
+                        <li class="nav-item dataset">
+                            <a class="nav-link active" href="dataset.html?organism=l_reuteri&dataset=lactoprecise">
+                                <i class="fas fa-angle-right pr-2"></i><i>lacto</i>lactoPRECISE
+                            </a>
+                        </li>
+                    </ul>
+                  </div>
+                </div>
+              </div>
+
               <!-- Mycobacterium tuberculosis -->
               <div class="panel">
                 <div class="panel-header">
@@ -384,7 +407,7 @@ <h2 class="mb-0">
                 </div>
               </div>
 
-              <!-- Pseudomonas syringae 
+              <!-- Pseudomonas syringae -->
               <div class="panel">
                 <div class="panel-header">
                   <h2 class="mb-0">
@@ -404,7 +427,7 @@ <h2 class="mb-0">
                   </div>
                 </div>
               </div>
-              -->
+
 
               <!-- Salmonella enterica -->
               <div class="panel">
@@ -461,10 +484,15 @@ <h2 class="mb-0">
                   <div class="panel-body">
                     <ul class="nav navbar-dark flex-column">
                         <li class="nav-item dataset">
-                            <a class="nav-link active" href="dataset.html?organism=s_aureus&dataset=staph_precise">
-                                <i class="fas fa-angle-right pr-2"></i><i>Staph</i>PRECISE
+                            <a class="nav-link active" href="dataset.html?organism=s_aureus&dataset=staph_precise108">
+                                <i class="fas fa-angle-right pr-2"></i><i>Staph</i>PRECISE108
                             </a>
                         </li>
+                        <li class="nav-item dataset">
+                          <a class="nav-link active" href="dataset.html?organism=s_aureus&dataset=staph_precise165"><i class="fas fa-angle-right pr-2"></i>
+                            <i>Staph</i>PRECISE165
+                          </a>
+                      </li>
                     </ul>
                   </div>
                 </div>

organisms/p_putida/precise321/dataset_meta.csv

@@ -1,9 +1,9 @@
-,0
-Title,<i>P. putida</i> <i>putida</i>PRECISE321
-Organism,<i>Pseudomonas putida</i>
-Strain,KT2440
-Publication,"<a href=""https://doi.org/10.1101/2022.01.11.475908"">Lim, et al., Forthcoming</a>"
-Number of Samples,321
-Number of Unique Conditions,118
-Number of Genes,5564
-Number of iModulons,84
+,0
+Title,<i>P. putida</i> <i>putida</i>PRECISE321
+Organism,<i>Pseudomonas putida</i>
+Strain,KT2440
+Publication,"<a href=""https://doi.org/10.1016/j.ymben.2022.04.004"">Lim, et al</a>"
+Number of Samples,321
+Number of Unique Conditions,118
+Number of Genes,5564
+Number of iModulons,84