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Update scikit-image requirement from <0.23,>=0.19 to >=0.19,<0.25 #919

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@dependabot dependabot bot commented on behalf of github Dec 12, 2024

Updates the requirements on scikit-image to permit the latest version.

Release notes

Sourced from scikit-image's releases.

v0.24.0

scikit-image 0.24.0

We're happy to announce the release of scikit-image 0.24.0!

Highlights

  • Add new class skimage.transform.ThinPlateSplineTransform, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with skimage.transform.warp (#7040).

New Features

  • Add new class skimage.transform.ThinPlateSplineTransform, which can estimate and model non-linear transforms with thin-plate splines and allows image warping with skimage.transform.warp (#7040).
  • Add skimage.morphology.remove_objects_by_distance, which removes labeled objects, ordered by size (default), until the remaining objects are a given distance apart (#4165).

Performance

  • In skimage.feature.corner_fast, test four directions earlier, which should more than half the computation time for most cases (#7394).

Documentation

  • Remove obsolete instruction about documenting changes (#7321).
  • Clarify description of data_range parameter in skimage.metrics.structural_similarity (#7345).
  • Update release process notes (#7402).
  • Fix typo in docstring of skimage.measure.regionprops (#7405).
  • Fix typos in skimage.measure.find_contours (#7411).
  • Add algorithmic complexity description + suggested alternatives to skimage.restoration.rolling_ball docstring (#7424).
  • Remove ineffective PR contribution clause (#7429).
  • Clarify objection period for lazy consensus in SKIP 1 (#7020).
  • Add a new gallery example "Use thin-plate splines for image warping" (#7040).
  • Add a new gallery example on "Removing objects" based on their size or distance (#4165).

Infrastructure

  • Escape user-controlled variables in GA workflow (#7415).
  • Add generation of GitHub artifact attestations to built sdist and wheels before upload to PyPI (#7427).
  • For publishing actions use the full length commit SHA (#7433).
  • Be mindful of resources by canceling in-progress workflows (#7436).
  • Add out-of-tree Pyodide builds in CI for scikit-image (#7350).

Maintenance

  • Replace deprecated nose style setup/teardown with autouse fixtures (#7343).
  • Temporarily pin macos-12 runner in CI (#7408).
  • Fix NumPy2 dtype promotion issues in pywt dependent code (#7414).
  • In skimage.util.compare_images, deprecate the parameter image2. Instead use image0, image1 to pass the compared images. Furthermore, all other parameters will be turned into keyword-only parameters once the deprecation is complete (#7322).
  • Add support back for Python 3.9 to enhance compatibility with Numpy 2 (#7412).
  • Disable ruff/pyupgrade rule UP038 (#7430).
  • Stop verifying wheel attestations temporarily (#7444).

Contributors

... (truncated)

Changelog

Sourced from scikit-image's changelog.

  • 0.24.0rc0.dev0 # development version for 0.24.0 first release candidate

Process

  • To debug building and testing wheels via CI, push to a branch named maintenance/anything.

    Once everything works as intended, remove those branches and proceed.

  • Set release variables:

    export VERSION=<version number>
    export PREVIOUS=<previous version number>
    export ORG="scikit-image"
    export REPO="scikit-image"
    

    If this is a prerelease:

    export NOTES="doc/source/release_notes/release_dev.rst"
    

    If this is release:

    export NOTES="doc/source/release_notes/release_${VERSION}.rst"
    git rm doc/source/release_notes/release_dev.rst
    
  • Autogenerate release notes:

    changelist ${ORG}/${REPO} v${PREVIOUS} main --version ${VERSION}  --out ${NOTES} --format rst
    changelist ${ORG}/${REPO} v${PREVIOUS} main --version ${VERSION}  --out ${VERSION}.md
    
  • If you want, you can review the release notes:

    • Scan the PR titles for highlights and mention these in the relevant sections of the notes. Ideally, all changed API objects are mentioned by name, e.g. a new parameter or a deprecated function.

    • Check for duplicate names in the automatically generated list of contributors and reviewers.

    • Append the release date to the title similar to previous iterations.

  • If this is a release:

    • (Only needed if you create a new branch) update the file skimage/data/_fetchers.py to point the pooch repository to the new branch instead of main during testing. Look for the parameter version_dev="main", for pooch.create and change it to the newly created branch name.

... (truncated)

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Updates the requirements on [scikit-image](https://github.com/scikit-image/scikit-image) to permit the latest version.
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.19.0...v0.24.0)

---
updated-dependencies:
- dependency-name: scikit-image
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Dec 12, 2024
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dependabot bot commented on behalf of github Dec 12, 2024

Dependabot tried to add @jklaise and @mauicv as reviewers to this PR, but received the following error from GitHub:

POST https://api.github.com/repos/SeldonIO/alibi-detect/pulls/919/requested_reviewers: 422 - Reviews may only be requested from collaborators. One or more of the users or teams you specified is not a collaborator of the SeldonIO/alibi-detect repository. // See: https://docs.github.com/rest/pulls/review-requests#request-reviewers-for-a-pull-request

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codecov bot commented Dec 12, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 77.83%. Comparing base (2425dec) to head (c9cccc3).
Report is 2 commits behind head on master.

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #919      +/-   ##
==========================================
- Coverage   77.85%   77.83%   -0.02%     
==========================================
  Files         161      161              
  Lines       10397    10397              
==========================================
- Hits         8095     8093       -2     
- Misses       2302     2304       +2     

see 1 file with indirect coverage changes

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dependabot bot commented on behalf of github Dec 16, 2024

Superseded by #921.

@dependabot dependabot bot closed this Dec 16, 2024
@dependabot dependabot bot deleted the dependabot/pip/scikit-image-gte-0.19-and-lt-0.25 branch December 16, 2024 07:07
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