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Add requirements.txt #870

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merged 5 commits into from
Feb 15, 2021
Merged

Add requirements.txt #870

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5702f46
ENH Add requirements.txt and text w/ Travis
ashgillman Feb 11, 2021
7d703fe
fixed pip call
KrisThielemans Feb 11, 2021
022dfad
Run pip install while still in SIRF directory
ashgillman Feb 12, 2021
9f0da09
Add optional requirements [no ci]
ashgillman Feb 12, 2021
50fe36e
Fix binary requirement definition, specify ci requirements separately.
ashgillman Feb 15, 2021
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25 changes: 12 additions & 13 deletions .travis.yml
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Expand Up @@ -192,17 +192,6 @@ before_install:
sudo apt install libvtk7-dev
fi
fi
- $PY_EXE --version
# get pip
- curl -0 https://bootstrap.pypa.io/get-pip.py -o get-pip.py
- $PY_EXE get-pip.py --user
- echo "Using Python executable $PY_EXE"
- $PY_EXE --version
- $PY_EXE -m pip --version
# setuptools may be out of date on osx
- $PY_EXE -m pip install --user -U pip setuptools wheel
# ensure python bin dir exists (and coverage dependencies installed)
- $PY_EXE -m pip install --user -U nose codecov coveralls requests
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# for counting clones, excluding ours
- |
if [[ -n "$GITHUB_API_TOKEN" ]]; then
Expand All @@ -212,7 +201,7 @@ before_install:
# count unique clones, excluding travis, and print total
TRAVIS_REPO_SLUG=CCPPETMR/SIRF-SuperBuild gh_stats_count -k uniques
fi
- $PY_EXE -m pip freeze
- $PY_EXE --version
# ccache compiler override
- ln -s "$(which ccache)" g++
- ln -s "$(which ccache)" g++-6
Expand All @@ -222,6 +211,17 @@ before_install:
- ln -s "$(which ccache)" gcc-7
- export PATH="$PWD:$PATH"
- popd
# get pip
- curl -0 https://bootstrap.pypa.io/get-pip.py -o get-pip.py
- $PY_EXE get-pip.py --user
- echo "Using Python executable $PY_EXE"
- $PY_EXE --version
- $PY_EXE -m pip --version
# setuptools may be out of date on osx
- $PY_EXE -m pip install --user -U pip setuptools wheel
- $PY_EXE -m pip freeze
- $PY_EXE -m pip install --user -r requirements.txt
- $PY_EXE -m pip install --user -r ci-requirements.txt
# no point re-downloading SIRF - just use local version
# N.B.: don't put into build matrix to allow caching.
- BUILD_FLAGS="$BUILD_FLAGS -DPYVER=$PYMVER -DSIRF_SOURCE_DIR:PATH=$PWD -DDISABLE_GIT_CHECKOUT_SIRF=ON"
Expand All @@ -233,7 +233,6 @@ before_install:
- echo "cmake flags $BUILD_FLAGS $EXTRA_BUILD_FLAGS"

install:
- $PY_EXE -m pip install --user --only-binary=numpy,scipy,matplotlib numpy scipy matplotlib deprecation nibabel
- cmake $BUILD_FLAGS $EXTRA_BUILD_FLAGS .
# Job may timeout (>50min) if no ccache, otherwise should be <1min:
- make
Expand Down
2 changes: 2 additions & 0 deletions ci-requirements.txt
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@@ -0,0 +1,2 @@
coveralls
coverage
8 changes: 8 additions & 0 deletions requirements.txt
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@@ -0,0 +1,8 @@
numpy --only-binary=numpy
scipy --only-binary=scipy
matplotlib --only-binary=matplotlib
docopt
psutil
nose
deprecation
nibabel # optional