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aarong1/README.md

Data Science Repo

Containing code snippets for niche topics, workflows and common design patterns.

RshinyHelpers

  • Check out the RshinyHelpers package for #rstats users that accumulates shiny functions and css helpers that I use only once or twice per shiny app. Also contains misc data functions that I find intuitive but don't fit any tidy workflow.

  • It is not available on CRAN. Install using devtools

  if(!require(devtools)) install.packages('devtools')
    devtools::install_github('aarong1/RshinyHelpers')

and attach the package into global namespace

  library(RShinyHelpers)

Personal sites

Not really being a developer, extensive use of static rendered sites helped for web apps and documentation. They were really easy to use with a low overhead, to both simplify html, js interactivity, and in deployment to Github Pages and Netlify. Full credit goes to the maintainers of the Hugo Themes

Hugo and GatsbyJS were popular options and would recommend either, both having a selection of theming options out of the box.

Gatsby in particular had a steep learning curve, being based on reactjs, but had the greatest reward.

Table of Contents

Itemised list

Repo What is it Tech Site
RshinyHelpers R package R, shiny, js, html, css Documentation
TCD Ising Model Ferromagnetic simulation Python
Geospatial NI PC Shapefiles R
Covid ABM Agent based Epi model Python
Persistent Storage Fullstack Shiny w/aws backend R, AWS, mysql Site
Epidemiology model Bayesian Epi Model R,stan Documentation
aarong1.github.io GH pages site Gatsbyjs, reactjs, html, css, js Personal Site
Academic Professional Site Hugo, netlify CV

Aaron

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  1. RshinyHelpers RshinyHelpers Public

    Helpers and elements to use in Rshiny

    R 1

  2. peristent_storage_Rshiny_aws peristent_storage_Rshiny_aws Public

    A demo shiny app demonstrating a backend database hosted on aws

    R 1

  3. TCD_Ising_Model TCD_Ising_Model Public

    Demonstration of ferromagnetic effects and phase change on a 2-D lattice simulating quantum 'exchange energy'

    Python

  4. Boilerplate Rshiny dockerfile. The ... Boilerplate Rshiny dockerfile. The dependencies are created and stored in the .renv file. This is done by calling renv::init() and renv::snapshot() #renv #shiny-server #r #docker. NB 'storage_app in lines 24 and 26 need changes to your application name. Run from app directory.
    1 
    # Base image https://hub.docker.com/u/rocker/
    2 
    FROM rocker/shiny:latest
    3 
    
              
    
              
    
                4
                
    # system libraries of general use
    
              
    
              
    
                5
                
    ## install debian packages
    
              
    
          
    
    
    
  
    

    5. 

      
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geospatial_data_manipulation
geospatial_data_manipulation          Public
        
    
      
    


      
    
        Documenting the steps and functions to build, tidy, merge and work with geo spatial data structures. Less of package more or a stream of consciousness.
      
    

      
    
          
  
  R


      
    
    
    
  
    

    6.