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[DC-3513] Update the raw_fitbit_qc.py - sleep_level - level check #1821

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merged 3 commits into from
Dec 14, 2023
Merged

[DC-3513] Update the raw_fitbit_qc.py - sleep_level - level check #1821

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b91141d
[DC-3513] Update query to exclude unknown sleep level
lledezma Dec 6, 2023
0b47bf3
[DC-3513] Relocate display function calls
lledezma Dec 6, 2023
34b6f72
[DC-3513] Rebase
lledezma Dec 6, 2023
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26 changes: 12 additions & 14 deletions data_steward/analytics/cdr_ops/raw_fitbit_qc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -138,9 +138,6 @@
src_ids_check_results = execute(client, src_ids_check)
zones_check_results = execute(client, zone_names_check)

display(src_ids_check_results)
display(zones_check_results)

check_status = "Look at the result and see if it meets all the following criteria."
msg = (
"The result must show that <br>"
Expand All @@ -154,6 +151,10 @@
HTML(
f'''<h3>Check Status: <span style="color: gold">{check_status}</span></h3><p>{msg}</p>'''
))

display(src_ids_check_results)
display(zones_check_results)

# -

# # ACTIVITY_SUMMARY table
Expand Down Expand Up @@ -214,6 +215,7 @@
))

display(df)

# -

# # SLEEP_LEVEL table
Expand All @@ -236,29 +238,21 @@
person_id,
sleep_date
FROM
`{{project_id}}.{{dataset}}.sleep_level`
(SELECT * FROM `{{project_id}}.{{dataset}}.sleep_level` WHERE level != 'unknown')
GROUP BY
person_id, sleep_date
HAVING levels > 7
HAVING levels > 6
)

SELECT
ROUND((COUNT(DISTINCT person_id)/(
SELECT
COUNT(DISTINCT person_id)
FROM
`{{project_id}}.{{dataset}}.sleep_level`
))*100,2) AS percentage
ROUND((COUNT(DISTINCT person_id)/(SELECT COUNT(DISTINCT person_id) FROM `{{project_id}}.{{dataset}}.sleep_level`))*100,2) AS percentage
FROM
all_levels_for_at_least_one_date
""").render(project_id=project_id, dataset=dataset_id)

src_ids_check_results = execute(client, check_src_ids)
sleep_levels_check_results = execute(client, check_sleep_levels)

display(src_ids_check_results)
display(sleep_levels_check_results)

check_status = "Look at the result and see if it meets all the following criteria."
msg = (
"The result must show that <br>"
Expand All @@ -272,6 +266,10 @@
HTML(
f'''<h3>Check Status: <span style="color: gold">{check_status}</span></h3><p>{msg}</p>'''
))

display(src_ids_check_results)
display(sleep_levels_check_results)

# -

# # DEVICE table
Expand Down