Author: Arpith C. Jacob, License: GPL

Systolic array to accelerate the Zuker RNA folding algorithm. See:

Rapid RNA Folding: Analysis and Acceleration of the Zuker Recurrence, Arpith Jacob, Jeremy Buhler, and Roger Chamberlain, IEEE Symposium on Field-Programmable Custom Computing Machines, 2010

http://www.cse.wustl.edu/~jarpith/download/dl.cgi?url=fccm10

Note:

• Requires addition of interface code at the top level.
• To compute hairpin loops of size > 255 you must regenerate some tables