add test file

tools/pg_tools/.shed.yml

@@ -0,0 +1,28 @@
+name: pgtools
+owner: bgruening
+description: tool suite for dealing with Postgresql databases from Galaxy's history
+
+long_description: |
+    The postgresql tools, are using a postgresql database in user-space.
+    Databases are packed into a tarball and stored in the user-history.
+    
+    These tools are based on https://github.com/solidsnack/pglite to interact with postgresql in user-space.
+
+categories:
+    - Data Export
+    - Data Source
+remote_repository_url: https://github.com/bgruening/galaxytools/tools/pgtools
+homepage_url: https://www.postgresql.org
+
+auto_tool_repositories:
+  name_template: "{{ tool_id }}"
+  description_template: "Postgresql toolbox: {{ tool_name }}"
+suite:
+  name: "postgresql_suite"
+  description: "A suite of Galaxy tools for dealing with Postgresql databases from Galaxy's history"
+
+  long_description: |
+    The postgresql tools, are using a postgresql database in user-space.
+    Databases are packed into a tarball and stored in the user-history.
+    
+    These tools are based on https://github.com/solidsnack/pglite to interact with postgresql in user-space.

tools/pg_tools/macros.xml

@@ -31,8 +31,8 @@
     </token>
 
     <token name="@PG_SETUP@"><![CDATA[
-            pglite setup -d ./postgresql &&
-            @PG_START@
+        pglite setup -d ./postgresql &&
+        @PG_START@
     ]]>
     </token>
 
@@ -42,9 +42,13 @@
     </token>
 
     <token name="@STATUS_RUNNING@"><![CDATA[
-        ###sleep 5
-        timeout 15 bash -c 'until pglite status -d ./postgresql | grep -F -q "server is running"; do sleep 1; done'
+        timeout 30 bash -c 'until pglite status -d ./postgresql | grep -F -q "server is running"; do sleep 1; done' &&
+        timeout 30 bash -c 'until ls -la ./postgresql | grep -F -q ".s.PGSQL.5432"; do sleep 1; done'
+    ]]>
+    </token>
 
+    <token name="@STOPPED@"><![CDATA[
+        timeout 30 bash -c 'until pglite status -d ./postgresql | grep -F -q "no server running"; do sleep 1; done'
     ]]>
     </token>
 
@@ -56,12 +60,12 @@
 
     <token name="@PG_STOP@"><![CDATA[
         pglite stop -d ./postgresql &&
-        sleep 10
+        @STOPPED@
     ]]>
     </token>
 
     <token name="@ARCHIVE_DATABASE@"><![CDATA[
-        tar -cvjf postgresql_out.tar.tar.bz2 ./postgresql
+        tar -cvjf postgresql_out.tar.bz2 postgresql
     ]]>
     </token>
     <xml name="citations">

tools/pg_tools/pg-import.xml

@@ -28,7 +28,7 @@
     <tests>
         <test>
             <param name="infile" value="init-galaxy-db.sql.in" ftype="txt" />
-            <output file="pg_import_result1.pg.tar.bz2" name="outfile" ftype="postgresql" compare="sim_size" />
+            <output file="pg_import_result1.pg.tar.bz2" name="outfile" ftype="postgresql" compare="sim_size" delta="200000" />
         </test>
     </tests>
     <help>