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@bids-apps

BIDS Apps

A collection of containerized neuroimaging workflows and pipelines that accept datasets organized according to the Brain Imaging Data Structure (BIDS).
README.md

👋 Welcome to the BIDS Apps github organization 👋

Click the following link if you want to view the BIDS Apps website.

If you want to learn more about BIDS in general, have a look at the bids-standard GitHub organization.

For generic BIDS related question use the NeuroStars Discourse Forum, under the bids tag.

Otherwise, feel free to open an issue on any of those repositories if you have specific questions or requests, or register more BIDS Apps by adding them to apps.yml.

As a reminder, all contributors have to adhere to our Code of Conduct.

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  1. dockerfile-templates dockerfile-templates Public

    Dockerfile templates commonly used in BIDS Apps

    Dockerfile 11 8

  2. example example Public template

    This an example app that can serve as a template.

    Python 17 32

  3. bids-apps.github.io bids-apps.github.io Public

    This BIDS Apps website has now been integrated to the BIDS website: https://github.com/bids-standard/bids-website.git

    CSS 3 14

  4. maintenance-tools maintenance-tools Public

    Shell

Repositories

Showing 10 of 43 repositories
  • giga_connectome Public

    generate connectome from fMRIPrep outputs

    bids-apps/giga_connectome’s past year of commit activity
    Python 4 MIT 6 24 2 Updated Feb 11, 2025
  • .github Public
    bids-apps/.github’s past year of commit activity
    0 0 0 0 Updated Feb 11, 2025
  • cat12 Public

    BIDS app version of the CAT12 toolbox

    bids-apps/cat12’s past year of commit activity
    Python 1 MIT 0 6 1 Updated Feb 10, 2025
  • maintenance-tools Public
    bids-apps/maintenance-tools’s past year of commit activity
    Shell 0 0 7 0 Updated Feb 4, 2025
  • example Public template

    This an example app that can serve as a template.

    bids-apps/example’s past year of commit activity
    Python 17 Apache-2.0 32 3 0 Updated Feb 4, 2025
  • matlab-compiler-runtime Public

    Base image with Matlab Compiler Runtime (MCR)

    bids-apps/matlab-compiler-runtime’s past year of commit activity
    Python 2 2 1 1 Updated Feb 3, 2025
  • base_validator Public
    bids-apps/base_validator’s past year of commit activity
    Dockerfile 0 Apache-2.0 3 1 0 Updated Nov 10, 2024
  • tracula Public

    implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

    bids-apps/tracula’s past year of commit activity
    Python 3 Apache-2.0 4 1 1 Updated Nov 4, 2024
  • mindboggle Public

    Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

    bids-apps/mindboggle’s past year of commit activity
    Python 5 Apache-2.0 4 9 1 Updated Nov 4, 2024
  • hyperalignment Public

    Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

    bids-apps/hyperalignment’s past year of commit activity
    Python 14 Apache-2.0 7 1 0 Updated Nov 4, 2024
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