Add NIRS support to BIDS

bids-standard · May 7, 2020 · 66afafd · 66afafd
1 parent 1888b87
commit 66afafd
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Showing 3 changed files with 44 additions and 0 deletions.
diff --git a/bids-validator/bids_validator/rules/file_level_rules.json b/bids-validator/bids_validator/rules/file_level_rules.json
@@ -221,5 +221,23 @@
 
   "stimuli": {
     "regexp": "^\\/(?:stimuli)\\/(?:.*)$"
+  },
+
+  "nirs": {
+    "regexp": "^\\/(sub-[a-zA-Z0-9]+)\\/(?:(ses-[a-zA-Z0-9]+)\\/)?nirs\\/\\1(_\\2)?(?:_task-[a-zA-Z0-9]+)?(?:_acq-[a-zA-Z0-9]+)?(?:_run-[0-9]+)?(?:_proc-[a-zA-Z0-9]+)?(?:_part-[0-9]+)?(_eeg\\.(@@@_nirs_type_)|(@@@_nirs_ext_@@@))$",
+    "tokens": {
+      "@@@_nirs_type_@@@": ["snirf"],
+      "@@@_nirs_ext_@@@": [
+        "_events\\.json",
+        "_events\\.tsv",
+        "_optodes\\.json",
+        "_optodes\\.tsv",
+        "_channels\\.json",
+        "_channels\\.tsv",
+        "_nirs\\.json",
+        "_coordsystem\\.json",
+        "_photo\\.jpg"
+      ]
+    }
   }
 }
diff --git a/bids-validator/bids_validator/rules/session_level_rules.json b/bids-validator/bids_validator/rules/session_level_rules.json
@@ -88,5 +88,19 @@
         "_photo.jpg"
       ]
     }
+  },
+
+  "nirs_ses": {
+    "regexp": "^\\/(sub-[a-zA-Z0-9]+)\\/(?:(ses-[a-zA-Z0-9]+)\\/)?\\1(_\\2)?(?:_task-[a-zA-Z0-9]+)?(?:_acq-[a-zA-Z0-9]+)?(?:_proc-[a-zA-Z0-9]+)?(@@@_nirs_ses_type_@@@)$",
+    "tokens": {
+      "@@@_nirs_ses_type_@@@": [
+        "_events.tsv",
+        "_channels.tsv",
+        "_electrodes.tsv",
+        "_eeg.json",
+        "_coordsystem.json",
+        "_photo.jpg"
+      ]
+    }
   }
 }
diff --git a/bids-validator/bids_validator/rules/top_level_rules.json b/bids-validator/bids_validator/rules/top_level_rules.json
@@ -79,6 +79,18 @@
       ]
     }
   },
+  "nirs_top": {
+    "regexp": "^\\/(?:ses-[a-zA-Z0-9]+_)?task-[a-zA-Z0-9]+(?:_acq-[a-zA-Z0-9]+)?(?:_proc-[a-zA-Z0-9]+)?(?:@@@_nirs_top_ext_@@@)$",
+    "tokens": {
+      "@@@_nirs_top_ext_@@@": [
+        "_nirs\\.json",
+        "_channels\\.tsv",
+        "_optodes\\.tsv",
+        "_photo\\.jpg",
+        "_coordsystem\\.json"
+      ]
+    }
+  },
   "multi_dir_fieldmap": {
     "regexp": "^\\/(?:acq-[a-zA-Z0-9]+_)?(?:dir-[a-zA-Z0-9]+_)epi\\.json$"
   },