add a recipe for FastqPuri (#13679)

* add a recipe for FastqPuri Changes to be committed: new file: recipes/fastqpuri/build.sh new file: recipes/fastqpuri/meta.yaml * fix issues in fastqpuri recipe Changes to be committed: modified: build.sh modified: meta.yaml
bioconda · Feb 19, 2019 · 8458d40 · 8458d40
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commit 8458d40
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diff --git a/recipes/fastqpuri/build.sh b/recipes/fastqpuri/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+Rscript -e 'install.packages(c("rmarkdown", "pheatmap"), repos="https://stat.ethz.ch/CRAN")'
+cmake -H. -Bbuild -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_C_COMPILER=${CC}
+cd build
+make
+make install
diff --git a/recipes/fastqpuri/meta.yaml b/recipes/fastqpuri/meta.yaml
@@ -0,0 +1,41 @@
+package:
+  name: fastqpuri
+  version: 1.0.5
+
+source:
+  url: https://github.com/jengelmann/FastqPuri/archive/v1.0.5.tar.gz
+  sha256: 33fedf39e6322428ff384a5815809f3721efe3fd93798807fdca8fbc50bd62c7
+
+build:
+  number: 3
+
+requirements:
+  build:
+    - cmake
+    - make
+    - {{ compiler('c') }}
+  host:
+    - r-base
+    - pandoc
+    - zlib
+    - bzip2
+  run:
+    - r-base
+    - pandoc
+    - zlib
+    - bzip2
+
+about:
+  home: https://github.com/jengelmann/FastqPuri
+  summary: fastq quality assessment and filtering tool
+  license: GPL3.0
+  license_file: LICENSE.txt
+
+test:
+  commands:
+    - Qreport -h
+    - Sreport -h
+    - trimFilter -h
+    - trimFilterPE -h
+    - makeTree -h
+    - makeBloom -h