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add a recipe for FastqPuri #13679

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merged 2 commits into from
Feb 19, 2019
Merged

add a recipe for FastqPuri #13679

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980816e
add a recipe for FastqPuri
Feb 17, 2019
2903119
fix issues in fastqpuri recipe
clottaz Feb 19, 2019
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7 changes: 7 additions & 0 deletions recipes/fastqpuri/build.sh
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#!/bin/bash

Rscript -e 'install.packages(c("rmarkdown", "pheatmap"), repos="https://stat.ethz.ch/CRAN")'
cmake -H. -Bbuild -DCMAKE_INSTALL_PREFIX=${PREFIX} -DCMAKE_C_COMPILER=${CC}
cd build
make
make install
41 changes: 41 additions & 0 deletions recipes/fastqpuri/meta.yaml
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package:
name: fastqpuri
version: 1.0.5

source:
url: https://github.com/jengelmann/FastqPuri/archive/v1.0.5.tar.gz
sha256: 33fedf39e6322428ff384a5815809f3721efe3fd93798807fdca8fbc50bd62c7

build:
number: 3

requirements:
build:
- cmake
- make
- {{ compiler('c') }}
host:
- r-base
- pandoc
- zlib
- bzip2
run:
- r-base
- pandoc
- zlib
- bzip2

about:
home: https://github.com/jengelmann/FastqPuri
summary: fastq quality assessment and filtering tool
license: GPL3.0
license_file: LICENSE.txt

test:
commands:
- Qreport -h
- Sreport -h
- trimFilter -h
- trimFilterPE -h
- makeTree -h
- makeBloom -h