Cutadapt: Require xopen >= 0.1.1 #3252
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0.1.0 can hang on gzipped files. See bcbio/bcbio-nextgen#1700 and marcelm/cutadapt@d096ff2
roryk
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Dec 19, 2016
cutadapt 1.8+ can handle the paired files in one go and as a bonus does some extra sanity checking of the FASTQ files as it goes. We swapped to use that. A bonus is this speeds up trimming because it only runs cutadapt once. Also closes #1700 via bioconda/bioconda-recipes#3252
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xopen 0.1.0 can hang on gzipped files. See bcbio/bcbio-nextgen#1700
and marcelm/cutadapt@d096ff2