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Convert now can convert old JSON collapsed tables to new HDF5 collapsed metadata format #515

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merged 3 commits into from
Jul 28, 2014

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Fixes #513

If you have a JSON collapsed biom table, you can get convert the table to new HDF5 format by passing the --collapsed-{axis} flag, where {axis} is the axis in which the table was collapsed on.

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Coverage increased (+0.17%) when pulling 892e6f1 on josenavas:update_convert into f20aab1 on biocore:master.

wasade added a commit that referenced this pull request Jul 28, 2014
Convert now can convert old JSON collapsed tables to new HDF5 collapsed metadata format
@wasade wasade merged commit 4f5eab8 into biocore:master Jul 28, 2014
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inability to convert from json biom to hdf5 biom
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