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Add prefix: streptomedb #1287

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Add prefix: streptomedb #1287

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4a1346f
Add prefix: streptomedb
nagutm Dec 1, 2024
9c528f3
Merge branch 'main' into StreptomeDB
bgyori Dec 2, 2024
23b4291
Remove contact prefix
bgyori Dec 2, 2024
1793b4a
Remove github key
nagutm Dec 3, 2024
3e0dba7
Merge branch 'StreptomeDB' of github.com:nagutm/bioregistry into Stre…
nagutm Dec 3, 2024
27089f6
Remove github key
nagutm Dec 3, 2024
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29 changes: 29 additions & 0 deletions src/bioregistry/data/bioregistry.json
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Original file line number Diff line number Diff line change
Expand Up @@ -108685,6 +108685,35 @@
],
"uri_format": "https://www.storedb.org/store_v3/study.jsp?studyId=$1"
},
"streptomedb": {
"contact": {
"email": "[email protected]",
"github": "PhaBiFreiburg",
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"name": "Stefan Günther",
"orcid": "0000-0003-3744-189X"
},
"contributor": {
"email": "[email protected]",
"github": "nagutm",
"name": "Mufaddal Naguthanawala",
"orcid": "0009-0009-5240-7463"
},
"description": "Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces.",
"example": "15753",
"github_request_issue": 1287,
"homepage": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb",
"name": "StreptomeDB",
"pattern": "^\\d+$",
"publications": [
{
"doi": "10.1093/nar/gkae1030",
"pubmed": "39498494",
"title": "StreptomeDB 4.0: a comprehensive database of streptomycetes natural products enriched with protein interactions and interactive spectral visualization",
"year": 2024
}
],
"uri_format": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb/get_drugcard/$1"
},
"string": {
"biocontext": {
"prefix": "STRING"
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1 change: 1 addition & 0 deletions src/bioregistry/data/curated_papers.tsv
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Expand Up @@ -70,4 +70,5 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes
39494269 0 0009-0009-5240-7463 2024-11-25 irrelevant_other 1288
39498478 1 0009-0009-5240-7463 2024-11-25 new_publication 1283 Publication for gold
39498484 1 0009-0009-5240-7463 2024-11-27 unclear 1288 Provider for ensembl IDs, issue with curation due to multiple URI formats. Similar case: (PMID: 39104285)
39498494 1 0009-0009-5240-7463 2024-11-30 new_prefix 1287 Unclear if numbers in URL are identifiers or arbitrary numbers
39526381 1 0009-0009-5240-7463 2024-12-01 new_publication 1290 Publication for refseq
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