remove special character in cleanvcf1_23 (#238)

broadinstitute · Sep 28, 2021 · 1eede50 · 1eede50
1 parent cd90dc4
commit 1eede50
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/wdl/CleanVcf1.wdl b/wdl/CleanVcf1.wdl
@@ -1360,7 +1360,7 @@ task CleanVcf1_23 {
   command <<<
     set -euxo pipefail
     cat <(zcat ~{cleanmale_vcf}|egrep "##") \
-      <(paste <(zcat ~{cleanmale_vcf}|egrep -v "##") <(zcat ~{cleanfemale_vcf}|cut -f10-|egrep -v "##") <(zcat ~{cleanother_vcf}|cut -f10-|egrep -v "##") ) \å
+      <(paste <(zcat ~{cleanmale_vcf}|egrep -v "##") <(zcat ~{cleanfemale_vcf}|cut -f10-|egrep -v "##") <(zcat ~{cleanother_vcf}|cut -f10-|egrep -v "##") ) \
       |bgzip \
       >combinedsex.vcf.gz
     tabix -p vcf combinedsex.vcf.gz