Initial commit

broadinstitute · Dec 4, 2024 · 34a90da · 34a90da
1 parent 688db3e
commit 34a90da
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/sv_utils/src/sv_utils/report_confident_irs_vapor_variants.py b/src/sv_utils/src/sv_utils/report_confident_irs_vapor_variants.py
@@ -223,7 +223,8 @@ def main(argv: Optional[List[Text]] = None) -> get_truth_overlap.ConfidentVarian
                             vapor_support_old = vapor_rec['p_non_ref_old'] > 1 - arguments.vapor_min_precision
                             vapor_support_genotyped = vapor_rec['p_non_ref_genotyped'] > 1 - arguments.vapor_min_precision
                             vapor_support_read_threshold = vapor_rec['p_non_ref_read_threshold'] > 1 - arguments.vapor_min_precision
-                            if vapor_support_old or vapor_support_genotyped or vapor_support_read_threshold:
+                            vapor_support = vapor_support_old or vapor_support_genotyped or vapor_support_read_threshold
+                            if vapor_support:
                                 vapor_support_gt = vapor_rec[genomics_io.Keys.gt]
                                 vapor_support_gq = vapor_rec[genomics_io.Keys.gq]
                                 vapor_support_reads = vapor_rec[genomics_io.Keys.vapor_read_scores]