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Update docker images list, triggered by 5ea22a5
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@gatk-sv-bot
gatk-sv-bot committed Oct 25, 2024
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22 changes: 11 additions & 11 deletions inputs/values/dockers.json
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{
"name": "dockers",
"cnmops_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/cnmops:2024-10-21-v0.29-beta-b647a464",
"cnmops_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/cnmops:2024-10-25-v0.29-beta-5ea22a52",
"condense_counts_docker": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432",
"gatk_docker": "us.gcr.io/broad-dsde-methods/eph/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT",
"gatk_docker_pesr_override": "us.gcr.io/broad-dsde-methods/tsharpe/gatk:4.2.6.1-57-g9e03432",
"genomes_in_the_cloud_docker": "us.gcr.io/broad-gotc-prod/genomes-in-the-cloud:2.3.2-1510681135",
"linux_docker": "marketplace.gcr.io/google/ubuntu1804",
"manta_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/manta:2023-09-14-v0.28.3-beta-3f22f94d",
"melt_docker": "us.gcr.io/talkowski-sv-gnomad/melt:a85c92f",
"scramble_docker": "us.gcr.io/broad-dsde-methods/markw/scramble:mw-scramble-99af4c50",
"samtools_cloud_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/samtools-cloud:2024-01-24-v0.28.4-beta-9debd6d7",
"sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2024-08-27-v0.29-beta-6b27c39f",
"sv_base_mini_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base-mini:2024-01-24-v0.28.4-beta-9debd6d7",
"sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-10-21-v0.29-beta-8c124629",
"sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-10-21-v0.29-beta-8c124629",
"wham_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/wham:2024-01-24-v0.28.4-beta-9debd6d7",
"scramble_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/scramble:2024-10-25-v0.29-beta-5ea22a52",
"samtools_cloud_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/samtools-cloud:2024-10-25-v0.29-beta-5ea22a52",
"sv_base_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base:2024-10-25-v0.29-beta-5ea22a52",
"sv_base_mini_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-base-mini:2024-10-25-v0.29-beta-5ea22a52",
"sv_pipeline_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-10-25-v0.29-beta-5ea22a52",
"sv_pipeline_qc_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline:2024-10-25-v0.29-beta-5ea22a52",
"wham_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/wham:2024-10-25-v0.29-beta-5ea22a52",
"igv_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/igv:mw-xz-fixes-2-b1be6a9",
"duphold_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/duphold:mw-xz-fixes-2-b1be6a9",
"vapor_docker": "us.gcr.io/broad-dsde-methods/eph/vapor:header-hash-2fc8f12",
"cloud_sdk_docker": "google/cloud-sdk",
"pangenie_docker": "us.gcr.io/broad-dsde-methods/vjalili/pangenie:vj-127571f",
"sv-base-virtual-env": "us.gcr.io/broad-dsde-methods/vjalili/sv-base-virtual-env:5994670",
"cnmops-virtual-env": "us.gcr.io/broad-dsde-methods/vjalili/cnmops-virtual-env:5994670",
"sv-pipeline-virtual-env": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline-virtual-env:2024-04-29-v0.28.4-beta-7fd43657",
"sv-pipeline-virtual-env": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-pipeline-virtual-env:2024-10-25-v0.29-beta-5ea22a52",
"samtools-cloud-virtual-env": "us.gcr.io/broad-dsde-methods/vjalili/samtools-cloud-virtual-env:5994670",
"sv-utils-env": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-utils-env:2023-02-01-v0.26.8-beta-9b25c72d",
"sv_utils_docker": "us.gcr.io/broad-dsde-methods/markw/sv-utils:mw-train-genotype-filtering-a9479501",
"sv_utils_docker": "us.gcr.io/broad-dsde-methods/gatk-sv/sv-utils:2024-10-25-v0.29-beta-5ea22a52",
"gq_recalibrator_docker": "us.gcr.io/broad-dsde-methods/markw/gatk:mw-tb-form-sv-filter-training-data-899360a",
"str": "us.gcr.io/broad-dsde-methods/gatk-sv/str:2023-05-23-v0.27.3-beta-e537bdd6",
"denovo": "us.gcr.io/broad-dsde-methods/gatk-sv/denovo:2024-10-21-v0.29-beta-8c124629"
"denovo": "us.gcr.io/broad-dsde-methods/gatk-sv/denovo:2024-10-25-v0.29-beta-5ea22a52"
}
22 changes: 11 additions & 11 deletions inputs/values/dockers_azure.json
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Original file line number Diff line number Diff line change
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{
"name": "dockers",
"cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2024-10-21-v0.29-beta-b647a464",
"cnmops_docker": "vahid.azurecr.io/gatk-sv/cnmops:2024-10-25-v0.29-beta-5ea22a52",
"condense_counts_docker": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432",
"gatk_docker": "vahid.azurecr.io/gatk-sv/gatk:2024-07-02-4.6.0.0-1-g4af2b49e9-NIGHTLY-SNAPSHOT",
"gatk_docker_pesr_override": "vahid.azurecr.io/tsharpe/gatk:4.2.6.1-57-g9e03432",
"genomes_in_the_cloud_docker": "vahid.azurecr.io/genomes-in-the-cloud:2.3.2-1510681135",
"linux_docker": "vahid.azurecr.io/google/ubuntu1804",
"manta_docker": "vahid.azurecr.io/gatk-sv/manta:2023-09-14-v0.28.3-beta-3f22f94d",
"melt_docker": "vahid.azurecr.io/melt:a85c92f",
"scramble_docker": "vahid.azurecr.io/scramble:mw-scramble-99af4c50",
"samtools_cloud_docker": "vahid.azurecr.io/gatk-sv/samtools-cloud:2024-01-24-v0.28.4-beta-9debd6d7",
"sv_base_docker": "vahid.azurecr.io/gatk-sv/sv-base:2024-08-27-v0.29-beta-6b27c39f",
"sv_base_mini_docker": "vahid.azurecr.io/gatk-sv/sv-base-mini:2024-01-24-v0.28.4-beta-9debd6d7",
"sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2024-10-21-v0.29-beta-8c124629",
"sv_pipeline_qc_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2024-10-21-v0.29-beta-8c124629",
"wham_docker": "vahid.azurecr.io/gatk-sv/wham:2024-01-24-v0.28.4-beta-9debd6d7",
"scramble_docker": "vahid.azurecr.io/gatk-sv/scramble:2024-10-25-v0.29-beta-5ea22a52",
"samtools_cloud_docker": "vahid.azurecr.io/gatk-sv/samtools-cloud:2024-10-25-v0.29-beta-5ea22a52",
"sv_base_docker": "vahid.azurecr.io/gatk-sv/sv-base:2024-10-25-v0.29-beta-5ea22a52",
"sv_base_mini_docker": "vahid.azurecr.io/gatk-sv/sv-base-mini:2024-10-25-v0.29-beta-5ea22a52",
"sv_pipeline_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2024-10-25-v0.29-beta-5ea22a52",
"sv_pipeline_qc_docker": "vahid.azurecr.io/gatk-sv/sv-pipeline:2024-10-25-v0.29-beta-5ea22a52",
"wham_docker": "vahid.azurecr.io/gatk-sv/wham:2024-10-25-v0.29-beta-5ea22a52",
"igv_docker": "vahid.azurecr.io/gatk-sv/igv:mw-xz-fixes-2-b1be6a9",
"duphold_docker": "vahid.azurecr.io/gatk-sv/duphold:mw-xz-fixes-2-b1be6a9",
"vapor_docker": "vahid.azurecr.io/eph/vapor:header-hash-2fc8f12",
"cloud_sdk_docker": "vahid.azurecr.io/google/cloud-sdk",
"pangenie_docker": "vahid.azurecr.io/vjalili/pangenie:vj-127571f",
"sv-base-virtual-env": "vahid.azurecr.io/vjalili/sv-base-virtual-env:5994670",
"cnmops-virtual-env": "vahid.azurecr.io/vjalili/cnmops-virtual-env:5994670",
"sv-pipeline-virtual-env": "vahid.azurecr.io/gatk-sv/sv-pipeline-virtual-env:2024-04-29-v0.28.4-beta-7fd43657",
"sv-pipeline-virtual-env": "vahid.azurecr.io/gatk-sv/sv-pipeline-virtual-env:2024-10-25-v0.29-beta-5ea22a52",
"samtools-cloud-virtual-env": "vahid.azurecr.io/vjalili/samtools-cloud-virtual-env:5994670",
"sv-utils-env": "vahid.azurecr.io/gatk-sv/sv-utils-env:2023-02-01-v0.26.8-beta-9b25c72d",
"sv_utils_docker": "vahid.azurecr.io/gatk-sv/sv-utils:2024-01-24-v0.28.4-beta-9debd6d7",
"sv_utils_docker": "vahid.azurecr.io/gatk-sv/sv-utils:2024-10-25-v0.29-beta-5ea22a52",
"gq_recalibrator_docker": "vahid.azurecr.io/markw/gatk:mw-tb-form-sv-filter-training-data-899360a",
"str": "vahid.azurecr.io/gatk-sv/str:2023-05-23-v0.27.3-beta-e537bdd6",
"denovo": "vahid.azurecr.io/gatk-sv/denovo:2024-10-21-v0.29-beta-8c124629"
"denovo": "vahid.azurecr.io/gatk-sv/denovo:2024-10-25-v0.29-beta-5ea22a52"
}

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