Additional commit to trigger docker sync

broadinstitute · Feb 7, 2025 · f6530a3 · f6530a3
1 parent 533623d
commit f6530a3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/denovo/denovo_svs.py b/src/denovo/denovo_svs.py
@@ -772,7 +772,7 @@ def main():
     print("Took %f seconds to process" % delta)
 
     # Filter out INS that are manta or melt only and are SR only, have GQ=0, and FILTER contains 'HIGH_SR_BACKGROUND'
-    # TODO: Do we also have to filter out DRAGEN-only records?
+    # TODO: Do we also have to filter out DRAGEN-only records matching the Manta condition?
     verbose_print('Filtering out INS that are manta or melt only and SR only, with GQ=0 and FILTER contains HIGH_SR_BACKGROUND', verbose)
     start = time.time()
     remove_ins = bed_child[(bed_child['SVTYPE'] == 'INS') & ((bed_child['ALGORITHMS'] == 'manta') | (bed_child['ALGORITHMS'] == 'melt')) & (bed_child['EVIDENCE_FIX'] == 'SR') & ((bed_child['GQ'] == '0') | (bed_child.FILTER.str.contains('HIGH_SR_BACKGROUND')))]['name_famid'].to_list()