Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add a WDL to run ExpansionHunter on multiple samples #253

Merged
merged 4 commits into from
Nov 29, 2021

Conversation

VJalili
Copy link
Member

@VJalili VJalili commented Nov 3, 2021

This PR adds ExpansionHunterScatter.wdl that takes multiple bam/cram files as input and runs them on separate instances of ExpansionHunter in parallel.

@VJalili VJalili requested a review from mwalker174 November 10, 2021 18:09
wdl/ExpansionHunterScatter.wdl Outdated Show resolved Hide resolved
wdl/ExpansionHunterScatter.wdl Show resolved Hide resolved
@VJalili VJalili requested a review from mwalker174 November 19, 2021 17:44
Copy link
Collaborator

@mwalker174 mwalker174 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks for addressing my comments - looks good!

@VJalili
Copy link
Member Author

VJalili commented Nov 29, 2021

Thank you @mwalker174

@VJalili VJalili merged commit c7c0a24 into broadinstitute:master Nov 29, 2021
@VJalili VJalili deleted the expansion_hunter_scatter branch November 29, 2021 21:17
@VJalili VJalili restored the expansion_hunter_scatter branch December 1, 2021 04:51
@VJalili VJalili deleted the expansion_hunter_scatter branch October 17, 2023 14:59
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants