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Disable MakeCohortVcfMetrics by default to avoid pesky resource errors #630

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merged 1 commit into from
Apr 29, 2024
Merged

Disable MakeCohortVcfMetrics by default to avoid pesky resource errors #630

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4 changes: 2 additions & 2 deletions wdl/CleanVcf.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ workflow CleanVcf {
String? gcs_project

# Module metrics parameters
# Run module metrics workflow at the end - on by default
# Run module metrics workflow at the end - off by default to avoid resource errors
Boolean? run_module_metrics
String? sv_pipeline_base_docker # required if run_module_metrics = true
File? primary_contigs_list # required if run_module_metrics = true
Expand Down Expand Up @@ -207,7 +207,7 @@ workflow CleanVcf {

File cleaned_vcf_ = select_first([ConcatCleanedVcfs.concat_vcf, ConcatVcfsHail.merged_vcf])

Boolean run_module_metrics_ = if defined(run_module_metrics) then select_first([run_module_metrics]) else true
Boolean run_module_metrics_ = if defined(run_module_metrics) then select_first([run_module_metrics]) else false
if (run_module_metrics_) {
call metrics.MakeCohortVcfMetrics {
input:
Expand Down