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Grouped MEI's with insertions in splitvariants.py #687

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Jul 2, 2024
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Grouped MEI's with insertions in splitvariants.py #687

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4 changes: 2 additions & 2 deletions src/sv-pipeline/04_variant_resolution/scripts/split_variants.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@ def process_bed_file(input_bed, n_per_split, bca=True):
condition_prefixes = {
'gt5kb': {'condition': lambda line: (line[SVTYPE_FIELD] == 'DEL' or line[SVTYPE_FIELD] == 'DUP') and (int(line[END_FIELD]) - int(line[START_FIELD]) >= 5000)},
'lt5kb': {'condition': lambda line: (line[SVTYPE_FIELD] == 'DEL' or line[SVTYPE_FIELD] == 'DUP') and (int(line[END_FIELD]) - int(line[START_FIELD]) < 5000)},
'bca': {'condition': lambda line: bca and line[SVTYPE_FIELD] not in ['DEL', 'DUP', 'INS']},
'ins': {'condition': lambda line: bca and line[SVTYPE_FIELD] == 'INS'}
'bca': {'condition': lambda line: bca and line[SVTYPE_FIELD] not in ['DEL', 'DUP'] and not line[SVTYPE_FIELD].startswith('INS')},
'ins': {'condition': lambda line: bca and line[SVTYPE_FIELD].startswith('INS')}
}

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