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v0.28.4-beta

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@epiercehoffman epiercehoffman released this 23 Oct 19:28
· 131 commits to main since this release
v0.28.4-beta
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Learn about vigilant mode.

Updates include

SV discovery algorithms:

  • Update manta to 1.6.0
  • Optimize Scramble

New functionality:

  • Add PED file validation to GatherBatchEvidence and as standalone script

Documentation and CI/CD:

  • Add Scramble docker to the build script & update docs
  • Clarify single-batch vs. multi-batch workflows in cohort mode Terra workspace on dashboard

Updates and bug fixes:

  • Remove redundant GetPed task in GatherBatchEvidence.CNMOPS
  • Make genome_tracks optional in FilterGenotypes
  • Toggle Collect PESR/Counts in GatherSampleEvidence with booleans
  • Fix allosomes_list bug
  • Filter mCNVs under 5kbp
  • Remove hgdp_1kgp_ped test batch input from MainVcfQc template
  • Fix melt insert size input type in EvidenceQC
  • Correct use of optimize_vcf_records_per_shard in FilterGenotypes
  • Update JoinRawCalls formatter arg in template
  • Check for empty scatter in GenotypeDepthPart2
  • Make the Cromwell root config in the MELT workflow portable

Full Changelog: v0.28.3-beta...v0.28.4-beta

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