Extract Cohort optimizations [VS-493] [VS-1516] #4933

Job	Run time
check if the environment has privileges	1s
build and push gatk docker to artifacts	2h 9m 30s
Validate generated WDLs using womtools	13m 14s
Validate script WDLs using womtools	49s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	2h 33m 16s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	2h 19m 59s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1h 52m 24s
WDL test RUN_M2_WDL on cromwell	1h 55m 54s
WDL test RUN_CNN_WDL on cromwell	1h 58m 13s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	3h 6m 36s
Java 17.0.6+10 build and test cloud	16m 5s
Java 17.0.6+10 build and test integration	34m 14s
Java 17.0.6+10 build and test unit	20m 13s
Java 17.0.6+10 test on docker integration	39m 43s
Java 17.0.6+10 test on docker unit	23m 55s
Java 17.0.6+10 test on docker variantcalling	32m 55s
Java 17.0.6+10 test on docker conda	30m 30s
	19h 27m 31s

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