VS-1549 Add VAT to integration tests #5026

Job	Run time
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 22s
build and push gatk docker to artifacts	2h 36m 21s
Validate script WDLs using womtools	47s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1h 47m 35s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	2h 37m 31s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	3h 19m 24s
WDL test RUN_M2_WDL on cromwell	1m 3s
WDL test RUN_CNN_WDL on cromwell	2h 0m 7s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1h 22m 53s
Java 17.0.6+10 build and test cloud	25m 41s
Java 17.0.6+10 build and test integration	30m 57s
Java 17.0.6+10 build and test unit	20m 1s
Java 17.0.6+10 test on docker integration	36m 39s
Java 17.0.6+10 test on docker unit	23m 16s
Java 17.0.6+10 test on docker variantcalling	32m 54s
Java 17.0.6+10 test on docker conda	30m 5s
	17h 18m 37s

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