VS-1549 Add VAT to integration tests #5031

Job	Run time
Validate generated WDLs using womtools	13m 27s
check if the environment has privileges	1s
build and push gatk docker to artifacts	1s
Validate script WDLs using womtools	49s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	2h 9m 46s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	2h 24m 37s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	2h 11m 53s
WDL test RUN_M2_WDL on cromwell	1h 30m 35s
WDL test RUN_CNN_WDL on cromwell	2h 8m 22s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	3h 26m 34s
Java 17.0.6+10 build and test cloud	15m 31s
Java 17.0.6+10 build and test integration	30m 3s
Java 17.0.6+10 build and test unit	20m 4s
Java ${{ matrix.Java }} test on docker ${{ matrix.testType }}	0s
	15h 11m 43s

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