VS-1549 Add VAT to integration tests #5033

Job	Run time
Validate script WDLs using womtools	49s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 35s
build and push gatk docker to artifacts	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	2h 44m 13s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	2h 9m 17s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1h 28m 49s
WDL test RUN_M2_WDL on cromwell	1h 42m 58s
WDL test RUN_CNN_WDL on cromwell	1h 34m 34s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1h 39m 12s
Java 17.0.6+10 build and test cloud	15m 42s
Java 17.0.6+10 build and test integration	30m 25s
Java 17.0.6+10 build and test unit	19m 10s
Java ${{ matrix.Java }} test on docker ${{ matrix.testType }}	0s
	12h 38m 46s

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