Add option to AnalyzeSaturationMutagenesis to keep disjoint mates #3294
tedsharpe
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gatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
1m 53s
Validate script WDLs using womtools
1m 35s
Validate generated WDLs using womtools
1m 50s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
11 errors and 3 warnings
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WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
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build and push gatk docker to artifacts
buildx failed with: ERROR: failed to solve: process "/bin/sh -c export GRADLE_OPTS=\"-Xmx4048m -Dorg.gradle.daemon=false\" && /gatk/gradlew clean collectBundleIntoDir shadowTestClassJar shadowTestJar -Drelease=$RELEASE" did not complete successfully: exit code: 1
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Validate generated WDLs using womtools
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
Process completed with exit code 1.
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Java 17.0.6+10 build and test integration
Process completed with exit code 1.
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WDL test RUN_M2_WDL on cromwell
Process completed with exit code 1.
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Java 17.0.6+10 build and test cloud
Process completed with exit code 1.
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 1.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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Java 17.0.6+10 build and test integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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Java 17.0.6+10 build and test cloud
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
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