VS 678 - adding optional interval list to the subcohort extract workflow #3471
koncheto-broad
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gatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
23m 33s
Validate script WDLs using womtools
1m 50s
Validate generated WDLs using womtools
15m 1s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
7 errors and 5 warnings
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Java 17.0.6+10 build and test cloud
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNN_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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Artifacts
Produced during runtime
| Name | Size | |
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gatkDockerImage
Expired
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2.11 GB |
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test-results-17.0.6+10-cloud
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322 KB |
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test-results-17.0.6+10-integration
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3.46 MB |
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test-results-17.0.6+10-unit
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155 MB |
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test-results-docker-17.0.6+10-conda
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282 KB |
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test-results-docker-17.0.6+10-integration
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3.38 MB |
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test-results-docker-17.0.6+10-unit
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153 MB |
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test-results-docker-17.0.6+10-variantcalling
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234 KB |
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