refactoring some stuff for clarity #3479

Job	Run time
build and push gatk docker to artifacts	22m 42s
Validate generated WDLs using womtools	13m 22s
Validate script WDLs using womtools	54s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	26m 35s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	28m 57s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	28m 13s
WDL test RUN_M2_WDL on cromwell	21m 12s
WDL test RUN_CNN_WDL on cromwell	18m 53s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	16m 48s
Java 17.0.6+10 build and test cloud	15m 8s
Java 17.0.6+10 build and test integration	27m 8s
Java 17.0.6+10 build and test unit	20m 15s
Java 17.0.6+10 test on docker integration	29m 52s
Java 17.0.6+10 test on docker unit	22m 34s
Java 17.0.6+10 test on docker variantcalling	26m 27s
Java 17.0.6+10 test on docker conda	29m 49s
	5h 48m 50s

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