Skip to content
Build and Test GATK 4

Add a native GATK implementation for 2bit references, and remove the dependency on the ADAM library #3492

Sign in to view logs

Add a native GATK implementation for 2bit references, and remove the dependency on the ADAM library

Add a native GATK implementation for 2bit references, and remove the dependency on the ADAM library #3492

Triggered via pull request December 8, 2023 07:54
@droazendroazen
synchronize #8606
dr_remove_adam_dependency
Status Success
Total duration 1h 3m 46s
Artifacts 8
This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

gatk-tests.yml

on: pull_request
check if the environment has privileges
1s
check if the environment has privileges
build and push gatk docker to artifacts
22m 45s
build and push gatk docker to artifacts
Validate script WDLs using womtools
48s
Validate script WDLs using womtools
Validate generated WDLs using womtools
13m 40s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Fit to window
Zoom out
Zoom in

Annotations

7 errors
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size
gatkDockerImage Expired
2.1 GB
test-results-17.0.6+10-cloud Expired
295 KB
test-results-17.0.6+10-integration Expired
3.57 MB
test-results-17.0.6+10-unit Expired
152 MB
test-results-docker-17.0.6+10-conda Expired
281 KB
test-results-docker-17.0.6+10-integration Expired
3.49 MB
test-results-docker-17.0.6+10-unit Expired
151 MB
test-results-docker-17.0.6+10-variantcalling Expired
234 KB