Handle CTX_PP/QQ and CTX_PQ/QP CPX_TYPE values in SVConcordance #4402

Job	Run time
Validate generated WDLs using womtools	13m 11s
build and push gatk docker to artifacts	25m 0s
Validate script WDLs using womtools	1m 12s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	27m 22s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	29m 38s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	28m 22s
WDL test RUN_M2_WDL on cromwell	17m 0s
WDL test RUN_CNN_WDL on cromwell	15m 59s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 48s
Java 17.0.6+10 build and test cloud	24m 7s
Java 17.0.6+10 build and test integration	31m 59s
Java 17.0.6+10 build and test unit	22m 15s
Java 17.0.6+10 test on docker integration	38m 16s
Java 17.0.6+10 test on docker unit	22m 37s
Java 17.0.6+10 test on docker variantcalling	32m 3s
Java 17.0.6+10 test on docker conda	31m 51s
	6h 13m 41s

Provide feedback