Skip to content

Commit

Permalink
Update scripts/variantstore/wdl/GvsWithdrawSamples.wdl
Browse files Browse the repository at this point in the history
Co-authored-by: Miguel Covarrubias <[email protected]>
  • Loading branch information
gbggrant and mcovarr authored Dec 4, 2023
1 parent a128986 commit 475d3af
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/variantstore/wdl/GvsWithdrawSamples.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,7 @@ task WithdrawSamples {
cat log_message.txt | sed -e 's/Number of affected rows: //' > rows_updated.txt

# Now, determine if there are any samples in the uploaded list that are NOT in sample_info and report this
echo "Determining if there are any new samples that should be upladed"
echo "Determining if there are any new samples that should be uploaded"
bq --apilog=false --project_id=gvs-internal query --format=csv --use_legacy_sql=false \
'SELECT callset.sample_name
FROM `~{project_id}.'"${TEMP_TABLE_NAME}"'` callset
Expand Down

0 comments on commit 475d3af

Please sign in to comment.