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mcovarr committed Jan 6, 2025
1 parent 29d5162 commit 57d346b
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions scripts/variantstore/wdl/GvsUtils.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -36,11 +36,11 @@ task GetToolVersions {
if [[ -e /cromwell_root/gcs_delocalization.sh ]]
then
CROMWELL_ROOT=/cromwell_root
elif [[ -e /mnt/cromwell_root/gcs_delocalization.sh ]]
elif [[ -e /mnt/disks/cromwell_root/gcs_delocalization.sh ]]
then
CROMWELL_ROOT=/mnt/cromwell_root
CROMWELL_ROOT=/mnt/disks/cromwell_root
else
echo "Could not find Cromwell root under /cromwell_root (PAPI v2) or /mnt/cromwell_root (GCP Batch), exiting."
echo "Could not find Cromwell root under /cromwell_root (PAPI v2) or /mnt/disks/cromwell_root (GCP Batch), exiting."
exit 1
fi
sed -n -E 's!.*gs://fc-(secure-)?([^\/]+).*!\2!p' ${CROMWELL_ROOT}/gcs_delocalization.sh | sort -u > ~{workspace_id_output}
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