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broadinstitute · Jan 30, 2025 · bb95780 · bb95780
1 parent 7929086
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl
@@ -84,7 +84,7 @@ task GetToolVersions {
     # GVS generally uses the smallest `alpine` version of the Google Cloud SDK as it suffices for most tasks, but
     # there are a handlful of tasks that require the larger GNU libc-based `slim`.
     String cloud_sdk_slim_docker = "gcr.io/google.com/cloudsdktool/cloud-sdk:435.0.0-slim"
-    String variants_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/variants:2025-01-27-alpine-46895d996b6b"
+    String variants_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/variants:2025-01-30-alpine-a29a91e48317"
     String variants_nirvana_docker = "us.gcr.io/broad-dsde-methods/variantstore:nirvana_2022_10_19"
     String gatk_docker = "us-central1-docker.pkg.dev/broad-dsde-methods/gvs/gatk:2024-11-28-gatkbase-b71132a18899"
     String real_time_genomics_docker = "docker.io/realtimegenomics/rtg-tools:latest"

diff --git a/scripts/variantstore/wdl/test/GvsQuickstartVATIntegration.wdl b/scripts/variantstore/wdl/test/GvsQuickstartVATIntegration.wdl
@@ -128,14 +128,14 @@ task AssertIdenticalOutputs {
         PS4='\D{+%F %T} \w $ '
         set -o errexit -o nounset -o pipefail -o xtrace
 
-        cat ~{actual_file} | gunzip > actual_file.txt
-        cat ~{expected_file} | gunzip > expected_file.txt
+        cat ~{actual_file} | gunzip | sort > actual_file.txt
+        cat ~{expected_file} | gunzip | sort > expected_file.txt
         set +o errexit
         cmp actual_file.txt expected_file.txt
         rc=$?
         set -o errexit
         if [[ $rc -ne 0 ]]; then
-            echo "The observed file ~{actual_file} differs from the expected ~{expected_file} in wc output!"
+            echo "The observed file ~{actual_file} differs from the expected ~{expected_file}!"
             exit 1;
         fi
     >>>