Update Mutect2.java Documentation #8999
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This commit changes the default --mitochondria-mode parameters to what they are supposed to be in the source code based on the raised question in the forum https://gatk.broadinstitute.org/hc/en-us/community/posts/29969305493147-Incorrect-documentation-for-mitochondria-mode-in-Mutect2 This commit also fixes the mitochondria mode flag to its correct naming in the documentation.
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This commit changes the default --mitochondria-mode parameters to what they are supposed to be in the source code based on the raised question in the forum
https://gatk.broadinstitute.org/hc/en-us/community/posts/29969305493147-Incorrect-documentation-for-mitochondria-mode-in-Mutect2
This commit also fixes the mitochondria mode flag to its correct naming in the documentation.