VS-1514 backwards compatibility #9049
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- With Echo we added phasing support. This PR adds code to check if the VET table(s) contain phasing information (well, PS) and allows phasing-related data to be extracted if present, otherwise doesn't include that (missing) data.
…ckwardsCompatibility
mcovarr
reviewed
Nov 20, 2024
…ckwardsCompatibility
RoriCremer
approved these changes
Nov 20, 2024
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@mcovarr - I have added the validation for |
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This PR makes the GvsPrepareRangesCallset wdl backwards compatible with older (well, at least Delta) call sets.
call_PScolumn in the vet table and if present uses phasing columns. If not present (as in Delta) does NOT include phasing.Successful run again Delta data here
Successful integration test run here