Code

Kvg improve wdl#46

Code

Merged

kvg merged 20 commits intomainbroadinstitute/hidive:mainfrom kvg_improve_wdlbroadinstitute/hidive:kvg_improve_wdlCopy head branch name to clipboardDec 2, 2024

+140-104

Commits

Commits on Dec 1, 2024

• Simplified WDL

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  2710bd2

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• Fixed typos in WDL

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  4a659d9

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• Added reference sequence to disk space calculation

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  556d62d

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• Debugging

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  9472975

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• Debugging

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  87b465a

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• More debugging

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  4e52576

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• Fixed typo

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  ecf13c4

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• Fix issue with quality score output

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  92f75c4

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• Fixed yet another typo

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  82712ac

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• Error-correct reads in parallel

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  52c7c5c

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Commits on Dec 2, 2024

• Still debugging

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  059a281

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• Change correct task's cpus from 4 to 8

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  63ad84f

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• More memory for minimap2

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  7ddb10a

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• Bug fix

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  55e1b7d

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• Simplified command

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  4ed011c

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• Comment out call task for now

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  df367a5

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• Increase maxRetries for Rescue

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  11227a7

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• Improvements to parallelized haplotype phasing

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  43c3a70

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• Uncomment Call task

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  c06cb02

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• I guess sometimes a read has a tid that doesn't map to a contig, or something

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  fabc82d

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