Kvg update wdl 0.1.98 #47
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* Auto-detect where to search in a genome to rescue reads * Accumulate the merged intervals continuously rather than overwriting the tree each time. The final merging pass iterates over loci and tries to merge overlapping intervals within each contig. However, the code inserts current_interval directly into new_tree only if there are no overlaps. If there are overlaps, it calculates min_start and max_end to create a merged_interval. If two or more intervals overlap, the code will keep overwriting new_tree in each iteration, potentially losing previously calculated merged intervals from earlier iterations. * added fetches option to rescue.rs, option search all, contig, contig-and-interval, unmapped --------- Co-authored-by: Kiran Garimella <[email protected]> Co-authored-by: bshifaw <[email protected]>
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