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chanzuckerberg · Feb 4, 2025 · 69ad6a3 · 69ad6a3
1 parent 11b0da2
commit 69ad6a3
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Showing 2 changed files with 10 additions and 6 deletions.
diff --git a/cellxgene_schema_cli/cellxgene_schema/validate.py b/cellxgene_schema_cli/cellxgene_schema/validate.py
@@ -496,7 +496,7 @@ def is_valid_row(row):
                 "NCBITaxon:7227": ("FBbt", "UBERON"),
             }
             always_allowed_prefix = "UBERON"
-            
+
             if row[tissue_type_column] == "cell culture":
                 if row[tissue_column] == "unknown":
                     return True

diff --git a/cellxgene_schema_cli/tests/test_schema_compliance.py b/cellxgene_schema_cli/tests/test_schema_compliance.py
@@ -2961,12 +2961,14 @@ def test_cell_culture_tissue_ontology_term_id(self, validator_with_zebrafish_ada
         obs.loc[obs.index[0], "tissue_ontology_term_id"] = tissue_ontology_term_id
         validator.validate_adata()
         assert not validator.errors
-    
+
     def test_cell_culture_tissue_ontology_term_id_invalid(self, validator_with_zebrafish_adata):
         validator = validator_with_zebrafish_adata
         obs = validator.adata.obs
         obs.loc[obs.index[0], "tissue_type"] = "cell culture"
-        obs.loc[obs.index[0], "tissue_ontology_term_id"] = "UBERON:0002048"  # only valid UBERON term if not cell culture
+        obs.loc[obs.index[0], "tissue_ontology_term_id"] = (
+            "UBERON:0002048"  # only valid UBERON term if not cell culture
+        )
         validator.validate_adata()
         assert len(validator.errors) > 0
 
@@ -3150,12 +3152,14 @@ def test_cell_culture_tissue_ontology_term_id(self, validator_with_fruitfly_adat
         obs.loc[obs.index[0], "tissue_ontology_term_id"] = tissue_ontology_term_id
         validator.validate_adata()
         assert not validator.errors
-    
+
     def test_cell_culture_tissue_ontology_term_id_invalid(self, validator_with_fruitfly_adata):
         validator = validator_with_fruitfly_adata
         obs = validator.adata.obs
         obs.loc[obs.index[0], "tissue_type"] = "cell culture"
-        obs.loc[obs.index[0], "tissue_ontology_term_id"] = "UBERON:0002048"  # only valid UBERON term if not cell culture
+        obs.loc[obs.index[0], "tissue_ontology_term_id"] = (
+            "UBERON:0002048"  # only valid UBERON term if not cell culture
+        )
         validator.validate_adata()
         assert len(validator.errors) > 0
 
@@ -3374,7 +3378,7 @@ def test_cell_culture_tissue_ontology_term_id(self, validator_with_roundworm_ada
         obs.loc[obs.index[0], "tissue_ontology_term_id"] = tissue_ontology_term_id
         validator.validate_adata()
         assert not validator.errors
-    
+
     def test_cell_culture_tissue_ontology_term_id_invalid(self, validator_with_roundworm_adata):
         validator = validator_with_roundworm_adata
         obs = validator.adata.obs