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updated sex_ontology_term_id #1145

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Dec 3, 2024
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updated sex_ontology_term_id #1145

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10 changes: 8 additions & 2 deletions schema/drafts/5.3.0.md
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Expand Up @@ -1011,7 +1011,12 @@ If <code>organism_ontolology_term_id</code> is <code>"NCBITaxon:9606"</code> for
</tr>
<tr>
<th>Value</th>
<td>categorical with <code>str</code> categories. This MUST be a descendant of <a href="https://www.ebi.ac.uk/ols4/ontologies/pato/classes?obo_id=PATO%3A0001894">PATO:0001894</a> for <i>phenotypic sex</i> or <code>"unknown"</code> if unavailable.
<td>categorical with <code>str</code> categories. This MUST be <code>"unknown"</code> if unavailable; otherwise, this MUST be one of:<br><br>
<ul>
<li><a href="https://www.ebi.ac.uk/ols4/ontologies/pato/classes?obo_id=PATO%3A0000383">PATO:0000383</a> for <i>female</i></li>
<li><a href="https://www.ebi.ac.uk/ols4/ontologies/pato/classes?obo_id=PATO%3A0000384">PATO:0000384</a> for <i>male</i></li>
<li><a href="https://www.ebi.ac.uk/ols4/ontologies/pato/classes?obo_id=PATO%3A0001340">PATO:0001340</a> for <i>hermaphrodite</i></li>
</ul>
</td>
</tr>
</tbody></table>
Expand Down Expand Up @@ -2061,7 +2066,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem
* Updated _Visium Spatial Gene Expression_ table row to _Descendants of Visium Spatial Gene Expression_
* Added matrix requirements for _Visium CytAssist Spatial Gene Expression, 11mm_.
* obs (Cell metadata)
* Updated the requirements for `array_col`:
* Updated the requirements for `array_col`:
* MUST be annotated if the `assay_ontology_term_id` is a descendant of _Visium Spatial Gene Expression_
* Added ranges for _Visium CytAssist Spatial Gene Expression, 6.5mm_ and _Visium CytAssist Spatial Gene Expression, 11mm_
* Updated the requirements for `array_row`:
Expand All @@ -2076,6 +2081,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem
* Added <code>genetic_ancestry_Oceanian</code>
* Added <code>genetic_ancestry_South_Asian</code>
* Updated the requirements for `in_tissue` to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for `sex_ontology_term_id` to limit values to <i>female</i>, <i>hermaphrodite</i>, <i>male</i>, or `"unknown"`
* obsm (Embeddings)
* Updated the requirements for `spatial` to include descendants of _Visium Spatial Gene Expression_ and to prohibit 'Not a Number' values.
* Updated the requirements for `X_{suffix}` to include descendants of _Visium Spatial Gene Expression_.
Expand Down
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