feat: support for all secondary species

[ejmolinelli]

Reason for Change

By 'secondary' species, we mean species for which support mostly involves the inclusion of a gene reference annotation file and the direct enumeration as a permitted species. There is no further ontological integration necessary

• cellxgene-schema CLI must validate Sus scrofa and descendants #1222
• cellxgene-schema CLI must validate Rattus norvegicus and descendants #1247
• cellxgene-schema CLI must validate Microcebus murinus #1245
• cellxgene-schema CLI must validate Pan troglodytes and descendants #1221
• cellxgene-schema CLI must validate Macaca mulatta and descendants #1220
• cellxgene-schema must validate Oryctolagus cuniculus and descendants #1246
• cellxgene-schema CLI must validate Gorilla gorilla gorilla #1219
• cellxgene-schema CLI must validate Macaca fascicularis and descendants #1244
• cellxgene-schema CLI must validate Callithrix jacchus #1218
• cellxgene-schema CLI must validate Caenorhabditis elegans #1201

Changes

• Each species generally involved the same process

1. registration with gene_info.yml to link the species name to the gene reference file
2. running make gene-processing to fetch the reference, extract the gene information and create the gene *.csv.gz artifact.
3. adding the species to the list of enumerated species in the gencode.py file
4. updating the schema_definition obs.organism_ontology_term_id to permit the new species.

Testing

• no additional testing is necessary

Notes for Reviewer

[joyceyan]

looks good outside of the failing test. feel free to ping me when it's resolved and i'll approve it!

[codecov]

Codecov Report

Attention: Patch coverage is 72.72727% with 9 lines in your changes missing coverage. Please review.

Project coverage is 89.64%. Comparing base (0aaf700) to head (b4a9191).
Report is 1 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1250      +/-   ##
==========================================
- Coverage   89.95%   89.64%   -0.31%     
==========================================
  Files          19       19              
  Lines        2200     2222      +22     
==========================================
+ Hits         1979     1992      +13     
- Misses        221      230       +9     

Components	Coverage Δ
cellxgene_schema_cli	90.48% <70.96%> (-0.44%)	⬇️
migration_assistant	91.26% <ø> (ø)
schema_bump_dry_run_genes	79.74% <100.00%> (-0.07%)	⬇️
schema_bump_dry_run_ontologies	99.53% <ø> (ø)

[joyceyan]

run make check in the root directory to fix the linter, but otherwise LGTM!