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dalmolingroup · Nov 26, 2024 · a62e001 · a62e001
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commit a62e001
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Showing 3 changed files with 11 additions and 8 deletions.
diff --git a/index.html b/index.html
@@ -280,5 +280,5 @@ <h2 id="citations">Citations</h2>
 
 <!--
 MkDocs version : 1.6.1
-Build Date UTC : 2024-11-26 15:09:19.753034+00:00
+Build Date UTC : 2024-11-26 15:11:29.974668+00:00
 -->
diff --git a/search/search_index.json b/search/search_index.json
diff --git a/usage/index.html b/usage/index.html
@@ -244,12 +244,15 @@ <h3 id="resource-requests">Resource requests</h3>
     Process `EURYALE:ALIGNMENT:DIAMOND_BLASTX  (WT_REP1)` terminated with an error exit status (137)
 
 Command executed:
-    STAR \
-        --genomeDir star \
-        --readFilesIn WT_REP1_trimmed.fq.gz  \
-        --runThreadN 2 \
-        --outFileNamePrefix WT_REP1. \
-        &lt;TRUNCATED&gt;
+    diamond \
+    blastx \
+    --threads 2 \
+    --db $DB \
+    --query test_minigut_sample2.fasta \
+    --outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore \
+    --more-sensitive --top 3 --compress 1 \
+    --out test_minigut_sample2.txt \
+    --log
 
 Command exit status:
     137