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Symposium
Toshiaki Katayama edited this page Sep 10, 2017
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Symposium schedule is here
Speakers, if your slides can be made open to public, please link at this page.
Morning session
- Introduction to the 10th NBDC/DBCLS BioHackathon, Toshiaki Katayama
- Tohoku Medical Megabank Project: Large-Scale Genome Cohort Study, Atsushi Shimizu
-
UniProt: a decade on the semantic web, challenges and successes, Jerven Bolleman
- BioHackathon award 2017 was given to Jerven Bolleman by BH organizers
- Call for comments on How BioHackathon have contributed
Afternoon session 1
- Advances in PubChem data linking: towards knowledge discovery, Evan Bolton
- Updates from the EBI RDF platform, Thomas Liener
- Agrisemantics: harnessing the Semantic Web technologies for the benefit of Agriculture, Food and Nutrition, Erick Antezana
- Glycomics@ExPASy, Julien Mariethoz
Afternoon session 2
- Enabling practical pan-genomics with the variation graph toolkit, Erik Garrison
- The Human Genome Variation Map, Adam Novak
- A Graph Genome Browser, Toshiyuki Yokoyama
DBCLS 10th anniversary session
- 10 years of DBCLS, Susumu Goto
- NBDC RDF portal, Kawashima Shuichi
- Umaka Suite (gdoc), Yasunori Yamamoto
- LOD Surfer: a search tool based on class-class relationships on LOD, Atsuko Yamaguchi
- SPANG: a SPARQL client for generating and reusing queries, Hirokazu Chiba
- Standardize experimental protocol description for reproducible science, Tazro Ohta
- Facilitating the use of public high-throughput sequencing data for omics research, Hidemasa Bono
- Linking Literature Resources with Data, Jin-Dong Kim
- PubCases: a diagnosis assistant tool for rare diseases using published case reports, Toyofumi Fujiwara
Morning session
- Hacking Data Interoperability - FAIR outcomes from BioHack 2015 & 2016, Mark Wilkinson
- Advancing Biomedical Knowledge Reuse with FAIR, Michel Dumontier
- Making GeneNetwork FAIR and creating a Journal of Open Data, Pjotr Prins
- BioThings and SmartAPI: building an ecosystem of interoperable biological knowledge APIs, Chunlei Wu
- Integrating Glycoinformatics with Public Web Resources, Kiyoko F. Aoki-Kinoshita
- Linking ecological ontologies to the Sustainable Development Agenda for 2030, Pier Luigi Buttigieg
- MicrobeDB.jp: integrating microbial genome and metagenome data using semantic web technology, Hiroshi Mori
Afternoon session 1
- The ExAC Browser: Displaying reference data information from over 60,000 exomes, Konrad Karczewski
- Clinical Deep Phenotyping and its applications, Tudor Groza
- Building and Application of AMED's Genomic Variation Database, Hiroyuki Mishima
- Discovery over a NGLY1 deficiency knowledge graph, Núria Queralt-Rosinach
Afternoon session 2
- Citation Graph Visualization, or how to tackle the publication avalanche (with Wikidata), Sebastian Burgstaller-Muehlbacher
- Learning from linked data, ontologies, and text, Robert Hoehndorf
- Integrating text-mined assertions into the Knowledge Base of Biology, Bill Baumgartner
LTs
- Linked experimental protocols, Alexander Garcia
- A SmartAPI for Spontaneous Reporting Systems, Juan Banda
- BioRuby, Naohisa Goto
- Bioschemas, Leyla Garcia
- Storing and Querying Evolutionary Relationships Among Millions of Genes in the Orthologous Matrix (OMA) Using RDF, Tarcisio Mendes de Farias
- minialign: fast and accurate alignment tool for PacBio and Nanopore long reads, Hajime Suzuki
- Noctua, Models, and the Greater Web, Seth Carbon
- GA4GH and Human Cell Atlas, David Steinberg
- Structured data for patient matchmaking, Orion Buske
- Linked ICGC - Cancer Genome RDF Data and its Usage, Ryota Yamanaka
- Leveraging Biomedical LOD Resources to Annotate the Function of Uncharacterized Disease-Associated Genes, Tiffany Callahan
- Deep Learning to mobilize trait data from multimodal data sources, Claus Weiland
- Single Cell and Linked Data, Raoul Jean Pierre Bonnal